Browse Element(s) Details


Os.23327.2.S1_a_at

Description gb:AK099018.1
DB_XREF= gi:32984227
TID=Os.23327.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative wall-associated kinase 1 (OSJNBa0095J15.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116L16, full insert sequence.
FL= gb:AK111989.1 gb:AK099018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1013011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10100OsAffx.8201.1.S1_x_at1/1110+5280872..5286442retrotransposon protein, putative, unclassified
LOC_Os10g10110NANA10+5287289..5290454hypothetical protein
LOC_Os10g10119NANA10+5300231..5300554NA
LOC_Os10g10130Os.23327.2.S1_a_at11/1110+5304095..5310653Calcium binding EGF domain containing protein, expressed
LOC_Os10g10130Os.9996.2.S1_at1/1110+5304095..5310653Calcium binding EGF domain containing protein, expressed
LOC_Os10g10140OsAffx.18201.1.S1_at10/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_at2/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_x_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.1257.1.S1_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10149Os.55619.1.S1_at11/1110+5334899..5335998expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23327.2.S1_a_at--562--7731Chr10:5306358..5306382 (25 bp)
GGTGTGGTACTCCTAGAACTTCTTC
LOC_Os10g10130
Os.23327.2.S1_a_at--422--5971Chr10:5306332..5306356 (25 bp)
GAGAAAGCAACCCATTTTTACAATA
LOC_Os10g10130
Os.23327.2.S1_a_at--885--6491Chr10:5306241..5306265 (25 bp)
GATATGGTCGATGCTCAAGTTCTCG
LOC_Os10g10130
Os.23327.2.S1_a_at--51--391Chr10:5306196..5306220 (25 bp)
ATCAAAGAAGTTGCATCCCTTGCTG
LOC_Os10g10130
Os.23327.2.S1_a_at--714--6311Chr10:5306119..5306143 (25 bp)
GATGACGTTACAGCTTCTGCGAACA
LOC_Os10g10130
Os.23327.2.S1_a_at--972--6311Chr10:5306089..5306113 (25 bp)
GATGAACTCATCTCAAGTAGATCCA
LOC_Os10g10130
Os.23327.2.S1_a_at--46--3211Chr10:5306076..5306100 (25 bp)
CAAGTAGATCCAACCATTGACCAAG
LOC_Os10g10130
Os.23327.2.S1_a_at--209--3291Chr10:5306046..5306070 (25 bp)
CAAACTGTTCTGACTGAAGGAGCCA
LOC_Os10g10130
Os.23327.2.S1_a_at--211--5311Chr10:5306031..5306055 (25 bp)
GAAGGAGCCAGTGACCCAGAGATAC
LOC_Os10g10130
Os.23327.2.S1_a_at--1065--7371Chr10:5306021..5306045 (25 bp)
GTGACCCAGAGATACAACCATTAGT
LOC_Os10g10130
Os.23327.2.S1_a_at--268--9771Chr10:5305972..5305996 (25 bp)
TAATGCAGCATCTCAACGCTTCCAA
LOC_Os10g10130
Target Sequence 
GGTGTGGTACTCCTAGAACTTCTTCTGAGAAAGCAACCCATTTTTACAATAAACTCTGGGATGAAACAAAATTTGTGTAG
TTACTTCCTTTCAGAGATTAAAACCAGGCCAATTACAGATATGGTCGATGCTCAAGTTCTCGAAGAAGCAAATGAGGAAG
ATATCAAAGAAGTTGCATCCCTTGCTGAGATGTGCTTGAAGCTAAAAGGTGAAGAAAGGCCCACGATGAAGAAAGTAGAG
ATGACGTTACAGCTTCTGCGAACAAAAACGATGAACTCATCTCAAGTAGATCCAACCATTGACCAAGAGATTCAAACTGT
TCTGACTGAAGGAGCCAGTGACCCAGAGATACAACCATTAGTAACAAATTTGGATGTTGATAGAGCTAATGCAGCATCTC
AACGCTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23327.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis