Browse Element(s) Details


OsAffx.6631.1.S1_at

Description tigr:9638.m00889
TID=OsAffx.6631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1016011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10140OsAffx.18201.1.S1_at10/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_at2/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_x_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.1257.1.S1_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10149Os.55619.1.S1_at11/1110+5334899..5335998expressed protein
LOC_Os10g10160OsAffx.6631.1.S1_at11/1110+5336964..5340250hypothetical protein
LOC_Os10g10170Os.19627.1.S1_a_at11/1110+5343540..5351016pentatricopeptide, putative, expressed
LOC_Os10g10180Os.8014.2.S1_x_at11/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.8014.1.S1_at10/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_at6/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_x_at5/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10190Os.50827.1.S1_x_at11/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.46916.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.11220.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6631.1.S1_at--757--7951Chr10:5337130..5337154 (25 bp)
GGATCAATGTTTCACGTCCCAAGAT
LOC_Os10g10160
OsAffx.6631.1.S1_at--862--152Chr10:5338697..5338721 (25 bp)
ATTTAGCACCGGTACCTATCGAACA
LOC_Os10g10160
OsAffx.6631.1.S1_at--243--3591Chr10:5339780..5339804 (25 bp)
CATTTTCGTCAAGCTGTTGCACTGA
LOC_Os10g10160
OsAffx.6631.1.S1_at--520--7971Chr10:5339812..5339836 (25 bp)
GGATGCCATCATCCCGGTATTGACG
LOC_Os10g10160
OsAffx.6631.1.S1_at--682--2971Chr10:5339881..5339905 (25 bp)
AATGGGTACATTTTGACGCTCCGTC
LOC_Os10g10160
OsAffx.6631.1.S1_at--85--1931Chr10:5339906..5339930 (25 bp)
ACGGTGCTCTTGCTGATGTGATATT
LOC_Os10g10160
OsAffx.6631.1.S1_at--403--231Chr10:5339926..5340032 (25 bp)
ATATTCGACCATATCCAGACGTTGG
LOC_Os10g10160
OsAffx.6631.1.S1_at--401--5771Chr10:5340025..5340049 (25 bp)
GACGTTGGATCTTGAAGGCCGGCTC
LOC_Os10g10160
OsAffx.6631.1.S1_at--225--8331Chr10:5340045..5340069 (25 bp)
GGCTCCTGATCGCAATTCACAGATA
LOC_Os10g10160
OsAffx.6631.1.S1_at--889--411Chr10:5340113..5340137 (25 bp)
ATCATTGCCCTTGGATTCCTGTACT
LOC_Os10g10160
OsAffx.6631.1.S1_at--451--8751Chr10:5340132..5340156 (25 bp)
TGTACTTCTCCCTGGATTGCAAGAT
LOC_Os10g10160
Target Sequence 
GGATCAATGTTTCACGTCCCAAGATTTTGTTACATTTTGAGTTACCATTGTAATTTAGCAAAGAGACGTCAGTTAGGCAA
AATCGCAAATTTAGCACCGGTACCTATCGAACAACCACAGTTCGATAGGGTACCTGCCGACAGGAAATCATTTTCGTCAA
GCTGTTGCACTGATCATATGGGATGCCATCATCCCGGTATTGACGATGAAAATAATGAACATGTGATCGGGATTGAAAGG
CATCCTGTGAATGGGTACATTTTGACGCTCCGTCACGGTGCTCTTGCTGATGTGATATTCGACCATATCCAGACGTTGGA
TCTTGAAGGCCGGCTCCTGATCGCAATTCACAGATACAATCATGGGATAATTCGAGGCACGATGTGCCCATGCTCTCGTA
TCATTGCCCTTGGATTCCTGTACTTCTCCCTGGATTGCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis