Browse Element(s) Details


Os.30608.1.S1_x_at

Description gb:AK059045.1
DB_XREF= gi:32969063
TID=Os.30608.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D08, full insert sequence.
FL= gb:AK059045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g101805/11CMV 1a interacting protein 1, putative, expressed
LOC_Os02g419544/11gibberellin 2-oxidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10149Os.55619.1.S1_at11/1110+5334899..5335998expressed protein
LOC_Os10g10160OsAffx.6631.1.S1_at11/1110+5336964..5340250hypothetical protein
LOC_Os10g10170Os.19627.1.S1_a_at11/1110+5343540..5351016pentatricopeptide, putative, expressed
LOC_Os10g10180Os.8014.2.S1_x_at11/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.8014.1.S1_at10/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_at6/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_x_at5/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10190Os.50827.1.S1_x_at11/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.46916.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.11220.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10200OsAffx.8420.1.S1_x_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.8420.1.S1_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.22927.2.S1_x_at1/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.4.S1_x_at2/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.3.S1_x_at1/1110+5384615..5388949transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
GO:0045544molecular_functiongibberellin 20-oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30608.1.S1_x_at--993--2551Chr02:25193899..25193923 (25 bp)
AAGACTGGCCTCAGTAATTTCCTCG
LOC_Os02g41954
Os.30608.1.S1_x_at--198--3131Chr02:25193884..25193908 (25 bp)
AATTTCCTCGTATGAGGCGCACACA
LOC_Os02g41954
Os.30608.1.S1_x_at--556--2191Chr02:25193864..25193888 (25 bp)
ACACAAATTCAGTGGCCGGCCAGTT
LOC_Os02g41954
Os.30608.1.S1_x_at--697--6831Chr02:25193842..25193866 (25 bp)
GTTTCAGTTCCGTTCTGTGTATCAT
LOC_Os02g41954
Os.30608.1.S1_x_at--1068--9851Chr02:25193669..25193693 (25 bp)
TACAGTTTATGTACGGCCTTCGATC
NONE
Os.30608.1.S1_x_at--980--2951NONE
AAGGCCATGGCCTACTGGCATGCTG
NONE
Os.30608.1.S1_x_at--896--8271Chr10:5361432..5361456 (25 bp)
GGCATAGGACAGTCACTGCTACCGT
LOC_Os10g10180
Os.30608.1.S1_x_at--1116--3831Chr10:5361447..5361471 (25 bp)
CTGCTACCGTGCCTTTCTGAAACAT
LOC_Os10g10180
Os.30608.1.S1_x_at--157--2411Chr10:5361466..5361490 (25 bp)
AAACATCTGATCTCCCACTGAAATT
LOC_Os10g10180
Os.30608.1.S1_x_at--836--5731Chr10:5361574..5361598 (25 bp)
GACGGCTGTACCAACCACAATAATT
LOC_Os10g10180
Os.30608.1.S1_x_at--998--3591Chr10:5361600..5361624 (25 bp)
CATTGAGTCGTGAGCTATTTGTTCG
LOC_Os10g10180
Target Sequence 
AAGACTGGCCTCAGTAATTTCCTCGTATGAGGCGCACACAAATTCAGTGGCCGGCCAGTTTCAGTTCCGTTCTGTGTATC
ATCAGTAAATGTACAATTATTAATGACTAAGAGTGCAGTACATTAATTAATTAATTAATTAGTTTATTGTAGCTTAGTTT
GACGGTGTACAAGTACTGGTAGGAGATTGCCGGTATATATGTACGTAGGAAATAAGATAAGGGATCCATGTACAGTTTAT
GTACGGCCTTCGATCCCTTGTCCTTTGGTTTGAATTATGATGTTTCTTAAAAAAAAAAAAAAAAAGGCCATGGCCTACTG
GCATGCTGGATTTGGAGGAGACGATGAGGCAAGCAGGCTTTGTTAATGTTCATTCTATACTGACAGATCCCAGGCATAGG
ACAGTCACTGCTACCGTGCCTTTCTGAAACATCTGATCTCCCACTGAAATTTTGTTCCATCTCAATTGTGATTGTGGATG
TATACTGGTAAACAAAAGAGTTGAAAAACTGTACCCTTGTTCATAAAATAGGACGACGGCTGTACCAACCACAATAATTA
CATTGAGTCGTGAGCTATTTGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30608.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis