Browse Element(s) Details


OsAffx.30108.1.S1_at

Description tigr:9637.m02780
TID=OsAffx.30108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3137011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31319OsAffx.8598.1.S1_at1/119+18831048..18832707NA
LOC_Os09g31330NANA9+18836405..18837157hypothetical protein
LOC_Os09g31340NANA9+18839526..18840120hypothetical protein
LOC_Os09g31350OsAffx.17975.1.S1_at11/119+18844066..18846214expressed protein
LOC_Os09g31360Os.51234.1.S1_at11/119+18848920..18852298expressed protein
LOC_Os09g31370OsAffx.30108.1.S1_at11/119+18852003..18854584expressed protein
LOC_Os09g31380OsAffx.30109.1.S1_at11/119+18862285..18866497transcription factor jumonji, putative, expressed
LOC_Os09g31390Os.53810.1.S1_at11/119+18867479..18876573bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30108.1.S1_at--759--2631Chr09:18852715..18852739 (25 bp)
AACCTTACCAGCTCATGATCACTGA
LOC_Os09g31370
OsAffx.30108.1.S1_at--1136--2451Chr09:18852689..18852713 (25 bp)
AACAAGCATTGCTCCAAGCTGGTGC
LOC_Os09g31370
OsAffx.30108.1.S1_at--402--7311Chr09:18852668..18852692 (25 bp)
GTGCTGTACCATCTGGAAGCTCTGA
LOC_Os09g31370
OsAffx.30108.1.S1_at--226--2651Chr09:18852641..18852665 (25 bp)
AACCAGGCAATGTACCAGGACTTCG
LOC_Os09g31370
OsAffx.30108.1.S1_at--262--6691Chr09:18852606..18852630 (25 bp)
GTTCCAGAAGAACGGCTCGCCACGG
LOC_Os09g31370
OsAffx.30108.1.S1_at--756--4171Chr09:18852572..18852596 (25 bp)
CCCAAGCAAGGATCCCAGGAGAGCT
LOC_Os09g31370
OsAffx.30108.1.S1_at--1057--4111Chr09:18852534..18852558 (25 bp)
CGCACTGCGCAACCTGAGCTGGAAC
LOC_Os09g31370
OsAffx.30108.1.S1_at--23--2891Chr09:18852497..18852521 (25 bp)
AAGGGCACCAAGTACTACAGCGAGG
LOC_Os09g31370
OsAffx.30108.1.S1_at--789--10511Chr09:18852470..18852494 (25 bp)
TTCAGCCGGTTCTGCGACCAGAAGA
LOC_Os09g31370
OsAffx.30108.1.S1_at--41--2811Chr09:18852449..18852473 (25 bp)
AAGATGAGCTGCATTGTGTCCACCC
LOC_Os09g31370
OsAffx.30108.1.S1_at--852--7451Chr09:18852434..18852458 (25 bp)
GTGTCCACCCTGAAGAATTGGTCCC
LOC_Os09g31370
Target Sequence 
AACCTTACCAGCTCATGATCACTGACAACAAGCATTGCTCCAAGCTGGTGCTGTACCATCTGGAAGCTCTGATGAACCAG
GCAATGTACCAGGACTTCGAGAACTGCACGTTCCAGAAGAACGGCTCGCCACGGTGCCTCGATCCCAAGCAAGGATCCCA
GGAGAGCTTCGCCTCCTTCGTCGCACTGCGCAACCTGAGCTGGAACGAGGTGCTCAGGAAGGGCACCAAGTACTACAGCG
AGGACTTCAGCCGGTTCTGCGACCAGAAGATGAGCTGCATTGTGTCCACCCTGAAGAATTGGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis