Browse Element(s) Details


OsAffx.17976.1.S1_at

Description tigr:9637.m02785
TID=OsAffx.17976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3141011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31380OsAffx.30109.1.S1_at11/119+18862285..18866497transcription factor jumonji, putative, expressed
LOC_Os09g31390Os.53810.1.S1_at11/119+18867479..18876573bZIP transcription factor family protein, expressed
LOC_Os09g31400Os.18923.2.S1_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.18923.1.S1_a_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.19627.1.S1_a_at1/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31410OsAffx.17976.1.S1_at11/119+18888723..18892801Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31420OsAffx.17977.1.S1_at11/119+18901783..18902564hypothetical protein
LOC_Os09g31430Os.11510.1.S1_s_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31430Os.11510.1.S1_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31434OsAffx.30110.1.S1_at11/119+18916298..18917041hypothetical protein
LOC_Os09g31438OsAffx.2442.1.S1_x_at1/119+18917534..18920656SBP-domain protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17976.1.S1_at--879--6151Chr09:18889972..18889996 (25 bp)
GAGGTACAACAACCCGATCATCTAC
LOC_Os09g31410
OsAffx.17976.1.S1_at--674--2611Chr09:18889962..18889986 (25 bp)
AACCCGATCATCTACGTCACAGAAA
LOC_Os09g31410
OsAffx.17976.1.S1_at--834--6431Chr09:18889958..18889981 (24 bp)
GATCATCTACGTCACAGAAAATGGA
LOC_Os09g31410
OsAffx.17976.1.S1_at--815--891Chr09:18889178..18889202 (25 bp)
AGGCGCTCAAGGACGGGCATAGGAT
LOC_Os09g31410
OsAffx.17976.1.S1_at--316--10751Chr09:18888842..18888866 (25 bp)
TTGACCACCGTTGCCATTGTTGAGT
LOC_Os09g31410
OsAffx.17976.1.S1_at--872--4351Chr09:18888838..18888862 (25 bp)
CCACCGTTGCCATTGTTGAGTGAGG
LOC_Os09g31410
OsAffx.17976.1.S1_at--285--7671Chr09:18888808..18888832 (25 bp)
GGGATAAAGCTCATTGTTGCTTGAG
LOC_Os09g31410
OsAffx.17976.1.S1_at--622--6671Chr09:18888793..18888817 (25 bp)
GTTGCTTGAGCTATTTGATTTACCA
LOC_Os09g31410
OsAffx.17976.1.S1_at--23--9991Chr09:18888773..18888797 (25 bp)
TACCAATTGGAATTCGTTTCGGTTG
LOC_Os09g31410
OsAffx.17976.1.S1_at--446--9391Chr09:18888760..18888784 (25 bp)
TCGTTTCGGTTGTTTGTTCGTCGAT
LOC_Os09g31410
OsAffx.17976.1.S1_at--558--9431Chr09:18888755..18888779 (25 bp)
TCGGTTGTTTGTTCGTCGATCTGGA
LOC_Os09g31410
Target Sequence 
GAGGTACAACAACCCGATCATCTACGTCACAGAAAATGGAATCGCCGAGGGGAACAACAAGAGCTTGCCAATCACGGAGG
CGCTCAAGGACGGGCATAGGATCGAGTTCCACTCGAAACACCTGCAGTTCGTCAACCACGCCATCAAGAACGGGGTGAAC
GTGAAGGGCTACTTCACCTGGACGTTCATGGACTGCTTCGAGTGGGGCGACGGATACCTCGACCGATTCGGCCTCATCTA
CATCGACCGCCTCAACAATCTCAAGCGCTACCACAAGCAGTCCAGCTACTGGATCGCCAACTTCCTCAAGCGGAAGAAGT
ACTGAGTGAGCTAATGGTTCTAGCTAAGCTAAGCTAGCTCTCTGTGCGATTTTCAGTTTCAGAGTGATTGGTGAATTGAT
GTACTGTACATGCTTGACCACCGTTGCCATTGTTGAGTGAGGGGGAGGGGATAAAGCTCATTGTTGCTTGAGCTATTTGA
TTTACCAATTGGAATTCGTTTCGGTTGTTTGTTCGTCGATCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis