Browse Element(s) Details


Os.30575.1.A1_at

Description gb:AK108648.1
DB_XREF= gi:32993857
TID=Os.30575.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-B12, full insert sequence.
FL= gb:AK108648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g124705/11hypothetical protein
LOC_Os11g082301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12420Os.53706.1.S1_at11/112+6476683..6480097Leucine Rich Repeat family protein, expressed
LOC_Os02g12430NANA2+6482468..6483370hypothetical protein
LOC_Os02g12440Os.52024.1.S1_at11/112+6488454..6490577Protein kinase domain containing protein, expressed
LOC_Os02g12450OsAffx.12003.1.S1_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_s_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_at1/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12460Os.52655.1.S1_x_at2/112+6496710..6497737hypothetical protein
LOC_Os02g12460OsAffx.19426.1.S1_x_at1/112+6496710..6497737hypothetical protein
LOC_Os02g12470Os.30575.1.A1_at5/112+6502150..6504010hypothetical protein
LOC_Os02g12480Os.7929.2.S1_a_at11/112+6510378..6515996expressed protein
LOC_Os02g12480Os.7929.4.S1_x_at2/112+6510378..6515996expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30575.1.A1_at--630--4632Chr11:4319319..4319343 (25 bp)
GCGTTGTTTCCAGGGCGAAGTGATT
LOC_Os11g08230
Os.30575.1.A1_at--12--5331Chr02:6502689..6502713 (25 bp)
GAAGTGATTTATCTGCCACTAGCAG
LOC_Os02g12470
Os.30575.1.A1_at--590--4371Chr02:6502674..6502698 (25 bp)
CCACTAGCAGTCTTCGTTTGTTTCA
LOC_Os02g12470
Os.30575.1.A1_at--547--91Chr02:6502650..6502674 (25 bp)
ATTCCTTGTGATGATCTGTGCCTGA
LOC_Os02g12470
Os.30575.1.A1_at--480--711Chr02:6502640..6502664 (25 bp)
ATGATCTGTGCCTGAGAAGTCCTCC
LOC_Os02g12470
Os.30575.1.A1_at--791--8172Chr09:2927071..2927232 (25 bp)
GGAACCTTGAGAATACTCGACCCCT
NONE
Os.30575.1.A1_at--700--9371Chr02:6501881..6501905 (25 bp)
TCGACCCCTTGCTGCATATATACAT
NONE
Os.30575.1.A1_at--660--7272Chr09:2927021..2927045 (25 bp)
GTCCAATTATGTGTTGCTCAACCCT
NONE
Os.30575.1.A1_at--562--7331Chr02:6501798..6501822 (25 bp)
GTGCAGGTCTACATGCTTTTGCTAA
NONE
Os.30575.1.A1_at--896--7852Chr04:23951630..23951654 (25 bp)
GGTATAAGTCATTTCTTTGGCACAT
NONE
Os.30575.1.A1_at--1067--273Chr04:23951767..23951786 (20 bp)
ATAGTGTGCTGACGATGACCCTGTA
NONE
Target Sequence 
GCGTTGTTTCCAGGGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGA
GAAGTCCTCCACTTCTCCCTACTANTTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCA
TGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATA
CTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGAT
AATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCAC
ATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAG
CTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30575.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis