Browse Element(s) Details


Os.7929.2.S1_a_at

Description gb:AK066371.1
DB_XREF= gi:32976389
TID=Os.7929.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065L09, full insert sequence.
FL= gb:AK066371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1248011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12440Os.52024.1.S1_at11/112+6488454..6490577Protein kinase domain containing protein, expressed
LOC_Os02g12450OsAffx.12003.1.S1_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_s_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_at1/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12460Os.52655.1.S1_x_at2/112+6496710..6497737hypothetical protein
LOC_Os02g12460OsAffx.19426.1.S1_x_at1/112+6496710..6497737hypothetical protein
LOC_Os02g12470Os.30575.1.A1_at5/112+6502150..6504010hypothetical protein
LOC_Os02g12480Os.7929.2.S1_a_at11/112+6510378..6515996expressed protein
LOC_Os02g12480Os.7929.4.S1_x_at2/112+6510378..6515996expressed protein
LOC_Os02g12490Os.53804.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.2.S1_x_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12500NANA2+6537656..6538153expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7929.2.S1_a_at--877--7631Chr02:6511466..6511490 (25 bp)
GGGACCTATTGATTGATTACCTTGT
LOC_Os02g12480
Os.7929.2.S1_a_at--155--10471Chr02:6511450..6511474 (25 bp)
TTACCTTGTGCCAATTCTGCTCTAA
LOC_Os02g12480
Os.7929.2.S1_a_at--292--4791Chr02:6511423..6511447 (25 bp)
GCTCTGAAACAGATGTGCCCACGGA
LOC_Os02g12480
Os.7929.2.S1_a_at--193--6271Chr02:6511412..6511436 (25 bp)
GATGTGCCCACGGAACTGCATAAAT
LOC_Os02g12480
Os.7929.2.S1_a_at--1104--8211Chr02:6511353..6511377 (25 bp)
GGAATTGCACACATGAACTGTCTTG
LOC_Os02g12480
Os.7929.2.S1_a_at--1148--2551Chr02:6511338..6511362 (25 bp)
AACTGTCTTGCCAGAGTGGAGATGC
LOC_Os02g12480
Os.7929.2.S1_a_at--846--8171Chr02:6511296..6511320 (25 bp)
GGAACTCCTTTTTATGGGCTCCATA
LOC_Os02g12480
Os.7929.2.S1_a_at--1096--351Chr02:6511274..6511298 (25 bp)
ATAATGGCCGCACTTGGCATCCGAC
LOC_Os02g12480
Os.7929.2.S1_a_at--29--7671Chr02:6511133..6511157 (25 bp)
GGGATACAATCTGGCTTGGCCCAAA
LOC_Os02g12480
Os.7929.2.S1_a_at--1038--1471Chr02:6511015..6511039 (25 bp)
AGAATTGAGCCATCAATCTCTCTCT
LOC_Os02g12480
Os.7929.2.S1_a_at--649--8071Chr02:6510969..6510993 (25 bp)
GGAGCCTCCATATGCAAACATTCTT
LOC_Os02g12480
Target Sequence 
GGGACCTATTGATTGATTACCTTGTGCCAATTCTGCTCTAATGGCTCTGAAACAGATGTGCCCACGGAACTGCATAAATT
TCAAGAGTGGTCTATGAAAATTGGAGAATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGGTA
ATGATATACTGGAACTCCTTTTTATGGGCTCCATAATGGCCGCACTTGGCATCCGACTATNTGAGCACGGAAATTTTCAG
TGGCAAANCCTTNCTGCGAATAGAAGCAAAGCNCTGCAAAATNTNGAGCTTNNCANGGGTCAAGTACTCAAGTTTNTNAC
CTTTTTCAGACAAGGGATACAATCTGGCTTGGCCCAAAGAACACATTACAGNGNCAGNGACAATGGGCTCCATANTNTTC
CATTGAAAAGAAAAATAAGAAACTGGAGCTGGAGTGGGAGATGTTTCAAGAAGAATTGAGCCATCAATCTCTCTCTCTCT
GGTTTCCTACTGGCCCTGGAGCCTCCATATGCAAACATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7929.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis