Browse Element(s) Details


Os.23800.2.S1_x_at

Description gb:AK103179.1
DB_XREF= gi:32988388
TID=Os.23800.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121I11, full insert sequence.
FL= gb:AK103179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1249011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12480Os.7929.2.S1_a_at11/112+6510378..6515996expressed protein
LOC_Os02g12480Os.7929.4.S1_x_at2/112+6510378..6515996expressed protein
LOC_Os02g12490Os.53804.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.2.S1_x_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12500NANA2+6537656..6538153expressed protein
LOC_Os02g12510OsAffx.28270.3.A1_at10/112+6541264..6543574hypothetical protein
LOC_Os02g12520OsAffx.31445.1.S1_x_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12520OsAffx.31445.1.S1_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12530NANA2+6553794..6554309Cytochrome P450 71D11, putative
LOC_Os02g12540OsAffx.2585.1.S1_at11/112+6556026..6558023Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23800.2.S1_x_at--983--5411Chr02:6531376..6531400 (25 bp)
GAAGCCCCTCTATATCTGGAGTTAG
LOC_Os02g12490
Os.23800.2.S1_x_at--1076--10071Chr02:6531355..6531378 (24 bp)
TAGGGAGCACATTTTTACTAGCAGA
LOC_Os02g12490
Os.23800.2.S1_x_at--512--2471Chr02:6530663..6530687 (25 bp)
AACAGAGGATACACCGTCAACTATA
LOC_Os02g12490
Os.23800.2.S1_x_at--437--7091Chr02:6530648..6530672 (25 bp)
GTCAACTATATCTTTCTCCATCGCA
LOC_Os02g12490
Os.23800.2.S1_x_at--963--9491Chr02:6530634..6530658 (25 bp)
TCTCCATCGCACTCTCTAAAATATA
LOC_Os02g12490
Os.23800.2.S1_x_at--805--6271Chr02:6530482..6530506 (25 bp)
GATGTCAACCATTTCTTGTCCACAA
LOC_Os02g12490
Os.23800.2.S1_x_at--840--10011Chr02:6529940..6529964 (25 bp)
TAGCATATGCTTTCATCACCTACTG
LOC_Os02g12490
Os.23800.2.S1_x_at--15--3851Chr02:6529918..6529942 (25 bp)
CTGCAAACATCAGTCACCTTTTACA
LOC_Os02g12490
Os.23800.2.S1_x_at--266--1171Chr02:6529907..6529931 (25 bp)
AGTCACCTTTTACACCAGCTGTATG
LOC_Os02g12490
Os.23800.2.S1_x_at--756--3391Chr02:6529892..6529916 (25 bp)
CAGCTGTATGCAGGTGGTGCGCCAA
LOC_Os02g12490
Os.23800.2.S1_x_at--262--6371Chr02:6529845..6529869 (25 bp)
GATCCTAGTATCCTTCAACTTCAAG
LOC_Os02g12490
Target Sequence 
GAAGCCCCTCTATATCTGGAGTTAGGGAGCACATTTTTACTAGCAGAAATGGTGAACATGGAGTAGTGCCATATTATGTC
AAGAGTTATCTTAATCTAACAGAGGATACACCGTCAACTATATCTTTCTCCATCGCACTCTCTAAAATATATATTTATCA
GGAAGATGTTTGTAGAACTTATTGATTTGGGTAATATTTATTCGTCGATGTCAACCATTTCTTGTCCACAATGAATGGTT
GATCGTATTCAAGATGACAAAGCCATATTTATGCTTCATAGTTTGAGACTACTATATGGAAAAAACAAAGCAATCTGAAC
GCAACACAGATTCAACAGGATGATCCAATGACAACAGTGAACACTATGGGTTAAGGTATCCAAACATAGCATATGCTTTC
ATCACCTACTGCAAACATCAGTCACCTTTTACACCAGCTGTATGCAGGTGGTGCGCCAAGCCGCCAAGGGCGCGCGCCCC
AGATCCTAGTATCCTTCAACTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23800.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis