Browse Element(s) Details


OsAffx.2585.1.S1_at

Description tigr:9630.m01139
TID=OsAffx.2585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome P450, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1254011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12490Os.53804.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.2.S1_x_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12500NANA2+6537656..6538153expressed protein
LOC_Os02g12510OsAffx.28270.3.A1_at10/112+6541264..6543574hypothetical protein
LOC_Os02g12520OsAffx.31445.1.S1_x_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12520OsAffx.31445.1.S1_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12530NANA2+6553794..6554309Cytochrome P450 71D11, putative
LOC_Os02g12540OsAffx.2585.1.S1_at11/112+6556026..6558023Cytochrome P450 family protein
LOC_Os02g12550Os.49199.1.S1_at11/112+6559488..6562188Cytochrome P450 family protein, expressed
LOC_Os02g12560NANA2+6566133..6566588expressed protein
LOC_Os02g12570Os.37484.1.S1_at10/112+6568159..6572501Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed
LOC_Os02g12580Os.10337.2.S1_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12580Os.10337.1.S1_x_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12590OsAffx.12007.1.S1_at10/112+6578959..6579539hypothetical protein
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2585.1.S1_at--801--6011Chr02:6557509..6557533 (25 bp)
GAGAGGCGTTTCACGGCAAGGCTAC
LOC_Os02g12540
OsAffx.2585.1.S1_at--221--7771Chr02:6557544..6557568 (25 bp)
GGTGACATCCAGGTGAGCAACCTCC
LOC_Os02g12540
OsAffx.2585.1.S1_at--602--10811Chr02:6557626..6557650 (25 bp)
TTGTGCCCCGGGAGAGCATTGACAT
LOC_Os02g12540
OsAffx.2585.1.S1_at--185--7091Chr02:6557658..6557682 (25 bp)
GTCAATGGCTATACGATCCCTGCAA
LOC_Os02g12540
OsAffx.2585.1.S1_at--399--551Chr02:6557673..6557697 (25 bp)
ATCCCTGCAAGGTCACGTATCGTTG
LOC_Os02g12540
OsAffx.2585.1.S1_at--1029--3211Chr02:6557777..6557801 (25 bp)
CAAGGTGGACTTTGCAGGGACTAGC
LOC_Os02g12540
OsAffx.2585.1.S1_at--962--7611Chr02:6557793..6557817 (25 bp)
GGGACTAGCTACGAGTACCTACCTT
LOC_Os02g12540
OsAffx.2585.1.S1_at--475--9951Chr02:6557853..6557877 (25 bp)
TACGCCTTACCTGTCTTGGAGATAG
LOC_Os02g12540
OsAffx.2585.1.S1_at--923--9031Chr02:6557884..6557908 (25 bp)
TGCAGCTTCTATACCACTTCAATTG
LOC_Os02g12540
OsAffx.2585.1.S1_at--744--31Chr02:6557905..6557929 (25 bp)
ATTGGTCACTCCCAAAGGGTGTCAC
LOC_Os02g12540
OsAffx.2585.1.S1_at--973--5431Chr02:6557949..6557973 (25 bp)
GAACCTGGCCTTGGTGCACGGCGTA
LOC_Os02g12540
Target Sequence 
GAGAGGCGTTTCACGGCAAGGCTACCGTAGGGGAGGGTGACATCCAGGTGAGCAACCTCCCCTACCTTAGGCTTTTTATC
AAGGAGACCCTTCGGTTGCACCCTCCAGTGCCTCTTCTTGTGCCCCGGGAGAGCATTGACATGTGCGAGGTCAATGGCTA
TACGATCCCTGCAAGGTCACGTATCGTTGTAAATGCATGGGCTATTGGGAGAGACCCAAAGTATTGGGATGATCCTGAGG
AATTCAAGCCAGAACGATTTGAGGGCAACAAGGTGGACTTTGCAGGGACTAGCTACGAGTACCTACCTTTCGGAGCCGGA
CGAAGGATTTGCCCGGGTATTACCTACGCCTTACCTGTCTTGGAGATAGCACTTGTGCAGCTTCTATACCACTTCAATTG
GTCACTCCCAAAGGGTGTCACCGAGGTGGACATGGAGGAGGAACCTGGCCTTGGTGCACGGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis