Browse Element(s) Details


Os.49199.1.S1_at

Description gb:AK107104.1
DB_XREF= gi:32992313
TID=Os.49199.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-122-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A09, full insert sequence.
FL= gb:AK107104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1255011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12500NANA2+6537656..6538153expressed protein
LOC_Os02g12510OsAffx.28270.3.A1_at10/112+6541264..6543574hypothetical protein
LOC_Os02g12520OsAffx.31445.1.S1_x_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12520OsAffx.31445.1.S1_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12530NANA2+6553794..6554309Cytochrome P450 71D11, putative
LOC_Os02g12540OsAffx.2585.1.S1_at11/112+6556026..6558023Cytochrome P450 family protein
LOC_Os02g12550Os.49199.1.S1_at11/112+6559488..6562188Cytochrome P450 family protein, expressed
LOC_Os02g12560NANA2+6566133..6566588expressed protein
LOC_Os02g12570Os.37484.1.S1_at10/112+6568159..6572501Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed
LOC_Os02g12580Os.10337.2.S1_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12580Os.10337.1.S1_x_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12590OsAffx.12007.1.S1_at10/112+6578959..6579539hypothetical protein
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49199.1.S1_at--961--6131Chr02:6561701..6561725 (25 bp)
GAGGGATCCACGATACTGGGACGAT
LOC_Os02g12550
Os.49199.1.S1_at--391--2491Chr02:6561759..6561783 (25 bp)
AACATGGTCGACTTTACAGGGAGTT
LOC_Os02g12550
Os.49199.1.S1_at--74--7651Chr02:6561777..6561801 (25 bp)
GGGAGTTGCTACGAGTACTTGCCTT
LOC_Os02g12550
Os.49199.1.S1_at--604--6091Chr02:6561789..6561813 (25 bp)
GAGTACTTGCCTTTTGGTGCAGGAA
LOC_Os02g12550
Os.49199.1.S1_at--1126--7951Chr02:6561841..6561865 (25 bp)
GGATCCCCATTTTGGAGATGGCGCT
LOC_Os02g12550
Os.49199.1.S1_at--85--5671Chr02:6561921..6561945 (25 bp)
GACATGGAGGAGTCATCTGGCCTCG
LOC_Os02g12550
Os.49199.1.S1_at--714--9451Chr02:6561936..6561960 (25 bp)
TCTGGCCTCGGTGCACGACGCAAGA
LOC_Os02g12550
Os.49199.1.S1_at--341--6651Chr02:6561990..6562014 (25 bp)
GTTGTTCCAGTATTATGAGGCACAT
LOC_Os02g12550
Os.49199.1.S1_at--133--10571Chr02:6562073..6562097 (25 bp)
TTCTTTTCCATGCATGATCCTCAGA
LOC_Os02g12550
Os.49199.1.S1_at--463--571Chr02:6562089..6562113 (25 bp)
ATCCTCAGATGCCTTTGGGCTTGCC
LOC_Os02g12550
Os.49199.1.S1_at--406--7591Chr02:6562105..6562129 (25 bp)
GGGCTTGCCCTCCAAATCATGAAAG
LOC_Os02g12550
Target Sequence 
GAGGGATCCACGATACTGGGACGATGCNGAGGAGTTCAAACCTNAGCGCTTCGAGAANAACATGGTCGACTTTACAGGGA
GTTGCTACGAGTACTTGCCTTTTGGTGCAGGAAGAAGGATGTGCCCTGGCGTAGCNTACGGGATCCCCATTTTGGAGATG
GCGCTNGTGCAGCTCCTCTATCACTTCNATTGGTCGCTGCCGAAGGGTGTCGTAGATGTGGACATGGAGGAGTCATCTGG
CCTCGGTGCACGACGCAAGACNCCTTTGTTACTCTGTGCGACNCCATTTGTTGTTCCAGTATTATGAGGCACATTNAAGA
TGTGCTAGTTGATTGGTGTAGAAGTCCTTTTTCTTTTTAATTGTGTGAAATTTTCTTTTCCATGCATGATCCTCAGATGC
CTTTGGGCTTGCCCTCCAAATCATGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis