Browse Element(s) Details


OsAffx.28270.3.A1_at

Description tigr:9630.m01136
TID=OsAffx.28270.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1251010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12490Os.53804.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.2.S1_x_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12500NANA2+6537656..6538153expressed protein
LOC_Os02g12510OsAffx.28270.3.A1_at10/112+6541264..6543574hypothetical protein
LOC_Os02g12520OsAffx.31445.1.S1_x_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12520OsAffx.31445.1.S1_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12530NANA2+6553794..6554309Cytochrome P450 71D11, putative
LOC_Os02g12540OsAffx.2585.1.S1_at11/112+6556026..6558023Cytochrome P450 family protein
LOC_Os02g12550Os.49199.1.S1_at11/112+6559488..6562188Cytochrome P450 family protein, expressed
LOC_Os02g12560NANA2+6566133..6566588expressed protein
LOC_Os02g12570Os.37484.1.S1_at10/112+6568159..6572501Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28270.3.A1_at--875--2711Chr02:6542279..6542303 (25 bp)
AAGCAATGGTCAAATGTTCGGTCAA
LOC_Os02g12510
OsAffx.28270.3.A1_at--745--731NONE
ATGTTCGGTCAAATGGCTTGCAGCC
NONE
OsAffx.28270.3.A1_at--133--2971Chr02:6542737..6542761 (25 bp)
AATGGCATTGTCTATGTGGGTCAAA
LOC_Os02g12510
OsAffx.28270.3.A1_at--304--8671Chr02:6542751..6542775 (25 bp)
TGTGGGTCAAAAGTTCTGGCGCGTT
LOC_Os02g12510
OsAffx.28270.3.A1_at--623--1231Chr02:6542762..6542785 (24 bp)
AGTTCTGGCGCGTTGATGATATTGC
LOC_Os02g12510
OsAffx.28270.3.A1_at--305--6211Chr02:6543185..6543209 (25 bp)
GAGGCTCATGTCGTAGAAGCCCTTC
LOC_Os02g12510
OsAffx.28270.3.A1_at--706--4192Chr02:6543285..6543309 (25 bp)
CCGAAGTCCCCGTGGCACAGGCGAG
LOC_Os02g12510
OsAffx.28270.3.A1_at--33--3311Chr02:6543428..6543452 (25 bp)
GACCACCGCGGTGTTTCCGGACAAG
LOC_Os02g12510
OsAffx.28270.3.A1_at--1117--9313Chr07:2098996..2099020 (25 bp)
TTTCCGGACAAGGTGGTCGGCCAGA
NONE
OsAffx.28270.3.A1_at--470--8791Chr02:6543481..6543505 (25 bp)
TGTTGTGCAGCGTGAAGACCGTCGT
LOC_Os02g12510
OsAffx.28270.3.A1_at--756--7353Chr07:2099047..2099071 (25 bp)
GTGAAGACCGTCGTGCCGGCTGCCT
NONE
Target Sequence 
AAGCAATGGTCAAATGTTCGGTCAAATGGCTTGCAGCCACAACTGGTAATGGCATTGTCTATGTGGGTCAAAAGTTCTGG
CGCGTTGATGATATTGCCAGCGGGAGGAGGAGGGCGTCAGCGGCCAGCGAGGGGCGACGCGGCGGCGGGGGGAGGAGCGG
CTCGCGGGCTCCCCCGTCGGCCCCCGCCCACGAGGCTCATGTCGTAGAAGCCCTTCCCGTCGGCACCGCCCAGCGTGAAC
GCGGCGAGGGTGATGGGCGGCGCGCCGCCGAGGGAGCAACTCACGGCGCCGCCGAAGTCCCCGTGGCACAGGCGAGGGAC
GCGGTGCCGGAGGGTGCACAGTCCGTGCGCGCCCACAAGCGGCCGGACCAACCATCCGGGGCTGGGAACGAGACGTTGGC
GCCGGGCGACAGCTCGAAGCCGCCCCCCCCCGACGACCACCGCGGTGTTTCCGGACAAGGTGGTCGGCCAGACGGTGTAG
GTGCAGTTGTTGTGCAGCGTGAAGACCGTCGTGCCGGCTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28270.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis