Browse Element(s) Details


Os.23800.1.S1_at

Description gb:AK108561.1
DB_XREF= gi:32993770
TID=Os.23800.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-A11, full insert sequence.
FL= gb:AK108561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1249011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12480Os.7929.2.S1_a_at11/112+6510378..6515996expressed protein
LOC_Os02g12480Os.7929.4.S1_x_at2/112+6510378..6515996expressed protein
LOC_Os02g12490Os.53804.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.2.S1_x_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12500NANA2+6537656..6538153expressed protein
LOC_Os02g12510OsAffx.28270.3.A1_at10/112+6541264..6543574hypothetical protein
LOC_Os02g12520OsAffx.31445.1.S1_x_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12520OsAffx.31445.1.S1_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12530NANA2+6553794..6554309Cytochrome P450 71D11, putative
LOC_Os02g12540OsAffx.2585.1.S1_at11/112+6556026..6558023Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23800.1.S1_at--1027--7711Chr02:6530246..6530270 (25 bp)
GGTGGCTATGTCTAGCTATTACTAT
LOC_Os02g12490
Os.23800.1.S1_at--1074--4871Chr02:6530232..6530256 (25 bp)
GCTATTACTATAGACCACTGCCTAA
LOC_Os02g12490
Os.23800.1.S1_at--1140--2091Chr02:6530205..6530229 (25 bp)
ACATCCTTATCGTACTTATCCGCAA
LOC_Os02g12490
Os.23800.1.S1_at--959--5191Chr02:6530184..6530208 (25 bp)
GCAATTTTCATTGAGCCTATGCCCA
LOC_Os02g12490
Os.23800.1.S1_at--471--4551Chr02:6530164..6530188 (25 bp)
GCCCAATCAACCGTGCTTTTTATAA
LOC_Os02g12490
Os.23800.1.S1_at--954--6871Chr02:6530130..6530154 (25 bp)
GTATTACTGTTGCTTTCTTGCCCTA
LOC_Os02g12490
Os.23800.1.S1_at--989--9571Chr02:6530115..6530139 (25 bp)
TCTTGCCCTATACATCTCTTGCATA
LOC_Os02g12490
Os.23800.1.S1_at--11--3571Chr02:6530094..6530118 (25 bp)
CATACCACCCTTGAGAGTTTCTGAG
LOC_Os02g12490
Os.23800.1.S1_at--659--10211Chr02:6530053..6530077 (25 bp)
TATTGATTAACCTTGCCATTAGCAG
LOC_Os02g12490
Os.23800.1.S1_at--341--4471Chr02:6529742..6529766 (25 bp)
GCCTCCATTAACTCTTGCTTTTGAT
LOC_Os02g12490
Os.23800.1.S1_at--35--10051Chr02:6529713..6529737 (25 bp)
TAGTATCTCTCAACTCCAAAACGGG
LOC_Os02g12490
Target Sequence 
GGTGGCTATGTCTAGCTATTACTATAGACCACTGCCTAACAACATCCTTATCGTACTTATCCGCAATTTTCATTGAGCCT
ATGCCCAATCAACCGTGCTTTTTATAAACATAGGAAGTATTACTGTTGCTTTCTTGCCCTATACATCTCTTGCATACCAC
CCTTGAGAGTTTCTGAGAATATTTGCAAAAAAATATTGATTAACCTTGCCATTAGCAGGAAAAAACAAAGCAATCTGAAC
GCAACACAGATTCAACAGGATGATCCAATGACAACAGTGAACACTATGGGTTAAGGTATCCAAACATAGCATATGCTTTC
ATCACCTACTGCAAACATCAGTCACCTTTTACACCAGCTGTATGCAGGTGGTGCGCCAAGCCGCCAAGGGCGCGCGCCCC
AGATCCTAGTATCCTTCAACTTCAAGATGAAAGACGTAAATGAACCCATGTATGAACATGCCTACATCTAATAGGCATCC
AACTATGCAAGGAAAGCCTATTTAGCCTCCATTAACTCTTGCTTTTGATTGAATAGTATCTCTCAACTCCAAAACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis