Browse Element(s) Details


Os.7929.4.S1_x_at

Description gb:AK061431.1
DB_XREF= gi:32971449
TID=Os.7929.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H07, full insert sequence.
FL= gb:AK061431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g124802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12440Os.52024.1.S1_at11/112+6488454..6490577Protein kinase domain containing protein, expressed
LOC_Os02g12450OsAffx.12003.1.S1_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_s_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_at1/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12460Os.52655.1.S1_x_at2/112+6496710..6497737hypothetical protein
LOC_Os02g12460OsAffx.19426.1.S1_x_at1/112+6496710..6497737hypothetical protein
LOC_Os02g12470Os.30575.1.A1_at5/112+6502150..6504010hypothetical protein
LOC_Os02g12480Os.7929.2.S1_a_at11/112+6510378..6515996expressed protein
LOC_Os02g12480Os.7929.4.S1_x_at2/112+6510378..6515996expressed protein
LOC_Os02g12490Os.53804.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.2.S1_x_at11/112+6529685..6533002expressed protein
LOC_Os02g12490Os.23800.1.S1_at11/112+6529685..6533002expressed protein
LOC_Os02g12500NANA2+6537656..6538153expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7929.4.S1_x_at--1136--3251Chr02:6511679..6511703 (25 bp)
CAACTGTGCTTGGAGGGTTCTACGC
LOC_Os02g12480
Os.7929.4.S1_x_at--824--10551Chr02:6511653..6511677 (25 bp)
TTCTTCCTCCACTCCGATGAAAAAA
LOC_Os02g12480
Os.7929.4.S1_x_at--657--2651NONE
AAGCCTATTGAGAGTGCACCCGGGA
NONE
Os.7929.4.S1_x_at--577--6111Chr02:6509361..6509385 (25 bp)
GAGTGCACCCGGGATACTGCTAATA
NONE
Os.7929.4.S1_x_at--516--1971Chr02:6509346..6509370 (25 bp)
ACTGCTAATACTGCCTTTCATCGAA
NONE
Os.7929.4.S1_x_at--667--6931Chr02:6509316..6509340 (25 bp)
GTAGGGATGCACACTACCCTGCATT
NONE
Os.7929.4.S1_x_at--1151--1611Chr02:6509243..6509267 (25 bp)
AGCGGCATTGCTGAACTTGTGCACA
NONE
Os.7929.4.S1_x_at--1112--2671Chr02:6509150..6509174 (25 bp)
AAGCGGCCAGATTAGTTGCATTGCA
NONE
Os.7929.4.S1_x_at--765--2991Chr02:6509116..6509140 (25 bp)
AATGAGACAATCCTCTGGCCATGTG
NONE
Os.7929.4.S1_x_at--784--7031Chr02:6508984..6509008 (25 bp)
GTACAATTTTTGTGCTCCAGGCTTA
NONE
Os.7929.4.S1_x_at--765--8951Chr02:6508894..6508918 (25 bp)
TGACATTTCCTGGATTTGTTCGACC
NONE
Target Sequence 
CAACTGTGCTTGGAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGAGTGCACCCGGGATACTG
CTAATACTGCCTTTCATCGAATTGAAGTAGGGATGCACACTACCCTGCATTCGCCTCTGGAGCAGCAACGTGAGACAGAC
AGAGGAAGACGCAAGACACAGCGGCATTGCTGAACTTGTGCACACAGATTACGAGAATTGGGAAGCGTCGTTTACAAGAA
CAAAGAAGAAGTAATTTAGCAAGAATCAAAGGAAGCGGCCAGATTAGTTGCATTGCAATGTCAGCTAATGAGACAATCCT
CTGGCCATGTGCAAAGAGCTTGAGACAAGGTGCTCGACGACTTGAGAGAGGTCGATGTTTACATGTTAAAACTTGAAGGC
GAAAACAAGGGTTCCAATCTCCCCGTCGTTTTTTGTAGGTACAATTTTTGTGCTCCAGGCTTAGAGAAGACCAGGACGCA
GTCAAGTCAAATGTACAAAATTAGGATTTTTAAAGATTTCGTCAGCAATGACATTTCCTGGATTTGTTCGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7929.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis