Browse Element(s) Details


OsAffx.18742.1.S1_at

Description tigr:9639.m00755
TID=OsAffx.18742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g082709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08220Os.55322.1.S1_at11/1111+4310945..4311517expressed protein
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08240OsAffx.30875.1.S1_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08240OsAffx.30875.1.S1_x_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08250OsAffx.18743.1.S1_at11/1111+4323671..4324000hypothetical protein
LOC_Os11g08260OsAffx.30874.1.S1_at11/1111+4325990..4326472hypothetical protein
LOC_Os11g08270OsAffx.18742.1.S1_at9/1111+4330362..4333676hypothetical protein
LOC_Os11g08280OsAffx.30877.1.S1_at11/1111+4338379..4338717hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18742.1.S1_at--324--5631NONE
GACACGAGTGTGTTGCTTCCCAAAG
NONE
OsAffx.18742.1.S1_at--1009--5751Chr11:4331464..4331488 (25 bp)
GACGTGAGCATTCAACTTACCCGAG
LOC_Os11g08270
OsAffx.18742.1.S1_at--45--2831Chr11:4331524..4331548 (25 bp)
AAGTTCCCGAGTACTGTAGTCACAA
LOC_Os11g08270
OsAffx.18742.1.S1_at--1160--5551NONE
GAAAGCACGCAGTATGGACCATGGA
NONE
OsAffx.18742.1.S1_at--10--3191Chr11:4332772..4332796 (25 bp)
CAATTGGCAAGGCTGCGCTGTCGAT
LOC_Os11g08270
OsAffx.18742.1.S1_at--1134--4051Chr11:4332793..4332817 (25 bp)
CGATGTGTGTCGACGCTACTGCTCA
LOC_Os11g08270
OsAffx.18742.1.S1_at--481--5871Chr11:4332840..4332864 (25 bp)
GAGCCTCTTGTAACGATTCTTCTGA
LOC_Os11g08270
OsAffx.18742.1.S1_at--558--1131Chr11:4332867..4332891 (25 bp)
AGTGCTGCTGCCAATACAACGACGT
LOC_Os11g08270
OsAffx.18742.1.S1_at--776--10171Chr11:4333223..4333247 (25 bp)
TATAAGTTCTCCGTTTCTGAAACCG
LOC_Os11g08270
OsAffx.18742.1.S1_at--601--10351Chr11:4333563..4333587 (25 bp)
TTTATTTCTGCAATCGAGCCTGCTG
LOC_Os11g08270
OsAffx.18742.1.S1_at--1029--4752Chr11:4333584..4333608 (25 bp)
GCTGCAATTGTCATCAACGTCTGGG
LOC_Os11g08270
Target Sequence 
GACACGAGTGTGTTGCTTCCCAAAGGGCGCAGCAGACAAATCCCCTTCCCAATTTACAGTTTTGTAACACGACGTGAGCA
TTCAACTTACCCGAGAACATCCAGACGCACACGATGCCTCAAGCCTTTCAAAGTTCCCGAGTACTGTAGTCACAACACAC
CAAGGAAACACGGGAAAGCACGCAGTATGGACCATGGAGCAAACAGTTGTGTGTCAATTGGCAAGGCTGCGCTGTCGATG
TGTGTCGACGCTACTGCTCACACAGGGGTCTCGAATGGCAAGGAGCCTCTTGTAACGATTCTTCTGACAAGTGCTGCTGC
CAATACAACGACGTTCAGAAATCAACCAATTGATGATAAATATAAGTTCTCCGTTTCTGAAACCGAGAAGAAATACGAAG
ACTGGTTTAAGATGATGGAAAATGATGTGTTATGTGATCAATTTACTCCATATCTTGAATTCTTTATTTCTGCAATCGAG
CCTGCTGCAATTGTCATCAACGTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis