Browse Element(s) Details


OsAffx.24601.1.S1_at

Description tigr:9630.m03512
TID=OsAffx.24601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3677011/11Galactosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36700Os.26352.1.S1_at11/112+22140560..22144278sucrose transporter BoSUT1, putative, expressed
LOC_Os02g36710Os.6793.1.S1_at11/112+22145697..22150173Nucleosome assembly protein containing protein, expressed
LOC_Os02g36720OsAffx.2884.1.S1_at10/112+22151324..22152489hypothetical protein
LOC_Os02g36730OsAffx.2885.1.S1_at11/112+22155458..22155790hypothetical protein
LOC_Os02g36740Os.18677.1.S1_at9/112+22157430..22161437zinc finger family protein, putative, expressed
LOC_Os02g36749NANA2+22163468..22164283hypothetical protein
LOC_Os02g36760OsAffx.12377.1.S1_at7/112+22166797..22167042hypothetical protein
LOC_Os02g36770OsAffx.24601.1.S1_at11/112+22168446..22172832Galactosyltransferase family protein, expressed
LOC_Os02g36780NANA2+22174302..22175150mTERF family protein, expressed
LOC_Os02g36790NANA2+22178949..22183425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36800OsAffx.22947.5.S1_x_at3/112+22187498..22193431retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g36810OsAffx.24603.1.S1_at11/112+22196829..22198433UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g36810OsAffx.24603.1.S1_x_at11/112+22196829..22198433UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24601.1.S1_at--412--8991Chr02:22171643..22171667 (25 bp)
TGAAGCACGCACATATGGCGACATT
LOC_Os02g36770
OsAffx.24601.1.S1_at--797--5671Chr02:22171662..22171686 (25 bp)
GACATTCAAGTGCTGCCCTTTGTTG
LOC_Os02g36770
OsAffx.24601.1.S1_at--755--3911Chr02:22171716..22171736 (21 bp)
CTGGCAATATGCATCTACGGGACTG
LOC_Os02g36770
OsAffx.24601.1.S1_at--456--9931Chr02:22171731..22171844 (25 bp)
TACGGGACTGGTGCTGTATCAGCGA
LOC_Os02g36770
OsAffx.24601.1.S1_at--129--7531Chr02:22171883..22171907 (25 bp)
GTGGACGAGATACACTCCTCAGTAA
LOC_Os02g36770
OsAffx.24601.1.S1_at--182--1971Chr02:22171912..22171936 (25 bp)
ACTGAATGTCAGTCACGGCCTACTT
LOC_Os02g36770
OsAffx.24601.1.S1_at--1059--1931Chr02:22171926..22171950 (25 bp)
ACGGCCTACTTTATGGTCGTATCAA
LOC_Os02g36770
OsAffx.24601.1.S1_at--78--7811Chr02:22171940..22171964 (25 bp)
GGTCGTATCAATTCTGACTCAGGTC
LOC_Os02g36770
OsAffx.24601.1.S1_at--1143--8931Chr02:22171954..22171978 (25 bp)
TGACTCAGGTCCTCACAGAAATCCT
LOC_Os02g36770
OsAffx.24601.1.S1_at--156--1731Chr02:22172299..22172323 (25 bp)
ACCATGGGCACACGGACCAGGATAT
LOC_Os02g36770
OsAffx.24601.1.S1_at--512--7171Chr02:22172742..22172766 (25 bp)
GTGCATCGTTGCTCACTACCAAGAA
LOC_Os02g36770
Target Sequence 
TGAAGCACGCACATATGGCGACATTCAAGTGCTGCCCTTTGTTGATTACTACAGTCTGATAACATGGAAGACACTGGCAA
TATGCATCTACGGGACTGGTGCTGTATCAGCGAAATATCTGATGAAAACAGACGATGATGCTTTTGTCCGTGTGGACGAG
ATACACTCCTCAGTAAAACAACTGAATGTCAGTCACGGCCTACTTTATGGTCGTATCAATTCTGACTCAGGTCCTCACAG
AAATCCTGAGAGCAAATGGTACATAAGCCCAGAGGAATGGCCTGAAGAGAAATACCCACCATGGGCACACGGACCAGGAT
ATGTGGTATCACAAGACATTGCAAAGGAAATCAACAGTTGGTATGAAACAAGTCATTTGAAGATGTTCAAACTAGAAGAT
GTAGCAATGGGTATATGGATTGCTGAAATGAAGAAGGGTGGGTTACCTGTCCAATACAAAACAGATGAAAGAATTAACAG
TGATGGCTGCAATGATGGGTGCATCGTTGCTCACTACCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis