Browse Element(s) Details


Os.6793.1.S1_at

Description gb:AK102294.1
DB_XREF= gi:32987503
TID=Os.6793.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089L07, full insert sequence.
FL= gb:AK102294.1 gb:AK059578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3671011/11Nucleosome assembly protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36640OsAffx.22699.1.S1_x_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36640OsAffx.18375.1.S1_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36650Os.27066.1.A1_x_at1/112+22122353..22125524hypothetical protein
LOC_Os02g36660NANA2+22127207..22127503retrotransposon, putative, centromere-specific
LOC_Os02g36670OsAffx.2883.1.S1_at11/112+22129647..22131075hypothetical protein
LOC_Os02g36680Os.8220.1.S1_at10/112+22134763..22136125expressed protein
LOC_Os02g36690OsAffx.12376.1.S1_x_at9/112+22138388..22139129hypothetical protein
LOC_Os02g36690OsAffx.12376.1.S1_at6/112+22138388..22139129hypothetical protein
LOC_Os02g36690Os.52986.1.S2_at1/112+22138388..22139129hypothetical protein
LOC_Os02g36700Os.26352.1.S1_at11/112+22140560..22144278sucrose transporter BoSUT1, putative, expressed
LOC_Os02g36710Os.6793.1.S1_at11/112+22145697..22150173Nucleosome assembly protein containing protein, expressed
LOC_Os02g36720OsAffx.2884.1.S1_at10/112+22151324..22152489hypothetical protein
LOC_Os02g36730OsAffx.2885.1.S1_at11/112+22155458..22155790hypothetical protein
LOC_Os02g36740Os.18677.1.S1_at9/112+22157430..22161437zinc finger family protein, putative, expressed
LOC_Os02g36749NANA2+22163468..22164283hypothetical protein
LOC_Os02g36760OsAffx.12377.1.S1_at7/112+22166797..22167042hypothetical protein
LOC_Os02g36770OsAffx.24601.1.S1_at11/112+22168446..22172832Galactosyltransferase family protein, expressed
LOC_Os02g36780NANA2+22174302..22175150mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6793.1.S1_at--94--2931Chr02:22146596..22146620 (25 bp)
AAGGAAGACCTGTGGCCCAATCCAT
LOC_Os02g36710
Os.6793.1.S1_at--490--4511Chr02:22146089..22146113 (25 bp)
GCCGATCGTCTGCATTTTGTGGATG
LOC_Os02g36710
Os.6793.1.S1_at--962--7971Chr02:22146069..22146093 (25 bp)
GGATGCTGTCACTCTGAAGGGCGAA
LOC_Os02g36710
Os.6793.1.S1_at--1000--5331Chr02:22146047..22146071 (25 bp)
GAAGTTGCGTGACCCTCGGTTGCTT
LOC_Os02g36710
Os.6793.1.S1_at--781--10771Chr02:22146007..22146031 (25 bp)
TTGATGACTTAGCTGGAACCCTTAG
LOC_Os02g36710
Os.6793.1.S1_at--193--6831Chr02:22145977..22146001 (25 bp)
GTTTAATGCCTTATGGAGTCCGTCG
LOC_Os02g36710
Os.6793.1.S1_at--298--7711Chr02:22145963..22145987 (25 bp)
GGAGTCCGTCGTATTTTCGACTCAA
LOC_Os02g36710
Os.6793.1.S1_at--1075--5631Chr02:22145934..22145958 (25 bp)
GACACCTCTATATCATAATCTGCGT
LOC_Os02g36710
Os.6793.1.S1_at--245--6271Chr02:22145881..22145905 (25 bp)
GATGTGTGGTTCATTGCGCTGCCTC
LOC_Os02g36710
Os.6793.1.S1_at--606--6691Chr02:22145777..22145801 (25 bp)
GTTGCCAGTCTGATGGGCTGTTATT
LOC_Os02g36710
Os.6793.1.S1_at--316--7231Chr02:22145699..22145723 (25 bp)
GTGCGGGTATCTCATGGTTATCTCG
LOC_Os02g36710
Target Sequence 
AAGGAAGACCTGTGGCCCAATCCATTGAAGTATTTCAATAATGAGGCTGAAGAGTTAGGAGAGGATGACGACGAAGAGGG
GTCTGATGCTGATGAGGGTGAAGAGGATGAGGAGGAGGAGAACTGAGTCTAGGATGTCAGATTGCGATGGTGCCGATCGT
CTGCATTTTGTGGATGCTGTCACTCTGAAGGGCGAAGTTGCGTGACCCTCGGTTGCTTCTTTCTTTTTTCTTTTTGATGA
CTTAGCTGGAACCCTTAGGAACTGTTTAATGCCTTATGGAGTCCGTCGTATTTTCGACTCAAAGGAGACACCTCTATATC
ATAATCTGCGTATAACCATGGAAGACATTTTAACCTGCTGATGTGTGGTTCATTGCGCTGCCTCTGGTGCTGTAGGGTGT
TCGTTCCTTTGTGCTCTCTGTCTTTTTTTTTTTTTTTTGTGTGTGTGTGGTCGCGCTGGCATTGTTGCCAGTCTGATGGG
CTGTTATTTCTCCCCCTANAAAGAGTGAAAAACCTGGCTTGTGATCATTGTTTACGAAACGCGTGCGGGTATCTCATGGT
TATCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis