Browse Element(s) Details


OsAffx.18375.1.S1_at

Description tigr:9638.m02026
TID=OsAffx.18375.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2421011/11hypothetical protein
LOC_Os07g246401/11retrotransposon protein, putative, unclassified
LOC_Os11g188101/11retrotransposon protein, putative, unclassified
LOC_Os02g366401/11retrotransposon protein, putative, unclassified
LOC_Os04g190901/11retrotransposon protein, putative, unclassified
LOC_Os11g359201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24160Os.45977.1.S1_at5/1110+12046754..12049728retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24170Os.45957.1.S1_at1/1110+12050363..12052178retrotransposon protein, putative, unclassified, expressed
LOC_Os10g24180NANA10+12055688..12056218hypothetical protein
LOC_Os10g24190OsAffx.8201.1.S1_x_at1/1110+12057819..12063385retrotransposon protein, putative, unclassified
LOC_Os10g24190OsAffx.22699.1.S1_x_at1/1110+12057819..12063385retrotransposon protein, putative, unclassified
LOC_Os10g24200NANA10+12063911..12067074hypothetical protein
LOC_Os10g24210OsAffx.18375.1.S1_at11/1110+12073235..12073990hypothetical protein
LOC_Os10g24220NANA10+12076055..12079258hypothetical protein
LOC_Os10g24230Os.10731.1.A1_a_at8/1110+12079899..12086216retrotransposon protein, putative, unclassified
LOC_Os10g24240NANA10+12087406..12087729transposon protein, putative, unclassified
LOC_Os10g24250OsAffx.20415.1.S1_at11/1110+12091693..12093128retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18375.1.S1_at--180--7111Chr10:12073360..12073384 (25 bp)
GTCACCAGAGCAGAAGAAGGAGTTT
LOC_Os10g24210
OsAffx.18375.1.S1_at--766--10553Chr10:12073423..12073447 (25 bp)
TTCATTCACAGAGACTCGGCAAGGA
LOC_Os10g24210
OsAffx.18375.1.S1_at--23--3791Chr10:12073437..12073461 (25 bp)
CTCGGCAAGGAAGAGTTGTTCAGAA
LOC_Os10g24210
OsAffx.18375.1.S1_at--440--6631Chr10:12073468..12073492 (25 bp)
GTTGAAACTAGTTGCCGACGTCCCT
LOC_Os10g24210
OsAffx.18375.1.S1_at--721--1211Chr10:12073477..12073501 (25 bp)
AGTTGCCGACGTCCCTGGAACAGGT
LOC_Os10g24210
OsAffx.18375.1.S1_at--634--6491Chr10:12073631..12073655 (25 bp)
GATAGCAATGGACTGCAGCCACAAT
LOC_Os10g24210
OsAffx.18375.1.S1_at--1052--2431Chr10:12073658..12073682 (25 bp)
AACAATTTTCAGGATCGGATCGACT
LOC_Os10g24210
OsAffx.18375.1.S1_at--1149--8211Chr10:12073844..12073868 (25 bp)
GGCAACCAACAGAGTTCTTCTAGCG
LOC_Os10g24210
OsAffx.18375.1.S1_at--224--3431Chr10:12073853..12073877 (25 bp)
CAGAGTTCTTCTAGCGCACCACCAA
LOC_Os10g24210
OsAffx.18375.1.S1_at--1101--2535Chr11:10650474..10650493 (20 bp)
AACTCAGCCGATGGCACCGGTTGCG
LOC_Os11g18810
OsAffx.18375.1.S1_at--719--1491Chr10:12073936..12073960 (25 bp)
AGCACAGACAAATGACCAATCCACG
LOC_Os10g24210
Target Sequence 
GTCACCAGAGCAGAAGAAGGAGTTTGAACTGATGATGAAACATACACAACAACAGTTCATGAATTCATTCACAGAGACTC
GGCAAGGAAGAGTTGTTCAGAAGTACAAGTTGAAACTAGTTGCCGACGTCCCTGGAACAGGTTCTTCTAAAGATGATGAT
TCAGGCAATAAAGGTACTGCTGGTGAACCAGGCGACAAGGGTGATGGTTTTCAGGAGGGAGCAGTTGAAGATCTTGGTCC
AGATAGCAATGGACTGCAGCCACAATTTAACAATTTTCAGGATCGGATCGACTACGCGGTGCAACATGCTTTGATCAACC
AATCAGGAGTCTTAGTCAATACTTTAACGAACATGGTGAAATTATTGGTTGATGGCACAATAGCTGAGCATCAAGCTATG
GGGCCAGTATATTTGCCAGGTGGTGTTTTCCCAAATTATAGGCCTTTGGTTACAGGCAACCAACAGAGTTCTTCTAGCGC
ACCACCAACTCAGCCGATGGCACCGGTTGCGGCTTCTGCTCTAGCTGCACGAGCTGCACCATCATCAGCACAGACAAATG
ACCAATCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis