Browse Element(s) Details


OsAffx.2884.1.S1_at

Description tigr:9630.m03507
TID=OsAffx.2884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3672010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36660NANA2+22127207..22127503retrotransposon, putative, centromere-specific
LOC_Os02g36670OsAffx.2883.1.S1_at11/112+22129647..22131075hypothetical protein
LOC_Os02g36680Os.8220.1.S1_at10/112+22134763..22136125expressed protein
LOC_Os02g36690OsAffx.12376.1.S1_x_at9/112+22138388..22139129hypothetical protein
LOC_Os02g36690OsAffx.12376.1.S1_at6/112+22138388..22139129hypothetical protein
LOC_Os02g36690Os.52986.1.S2_at1/112+22138388..22139129hypothetical protein
LOC_Os02g36700Os.26352.1.S1_at11/112+22140560..22144278sucrose transporter BoSUT1, putative, expressed
LOC_Os02g36710Os.6793.1.S1_at11/112+22145697..22150173Nucleosome assembly protein containing protein, expressed
LOC_Os02g36720OsAffx.2884.1.S1_at10/112+22151324..22152489hypothetical protein
LOC_Os02g36730OsAffx.2885.1.S1_at11/112+22155458..22155790hypothetical protein
LOC_Os02g36740Os.18677.1.S1_at9/112+22157430..22161437zinc finger family protein, putative, expressed
LOC_Os02g36749NANA2+22163468..22164283hypothetical protein
LOC_Os02g36760OsAffx.12377.1.S1_at7/112+22166797..22167042hypothetical protein
LOC_Os02g36770OsAffx.24601.1.S1_at11/112+22168446..22172832Galactosyltransferase family protein, expressed
LOC_Os02g36780NANA2+22174302..22175150mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2884.1.S1_at--488--7251Chr02:22152110..22152134 (25 bp)
GTCCGCCACCGTGTGAAGACAGGAG
LOC_Os02g36720
OsAffx.2884.1.S1_at--341--1451Chr02:22151870..22151894 (25 bp)
AGAAGTCTAATATACCTCCTCTGGC
LOC_Os02g36720
OsAffx.2884.1.S1_at--855--2231Chr02:22151778..22151802 (25 bp)
AAATTGCCATCCCTGGACCCAAGAG
LOC_Os02g36720
OsAffx.2884.1.S1_at--565--5811Chr02:22151763..22151787 (25 bp)
GACCCAAGAGTCCAAGTTATCAGCA
LOC_Os02g36720
OsAffx.2884.1.S1_at--725--6791Chr02:22151748..22151772 (25 bp)
GTTATCAGCAAAGTCAGCGCTCGGC
LOC_Os02g36720
OsAffx.2884.1.S1_at--947--2311Chr02:22151739..22151763 (25 bp)
AAAGTCAGCGCTCGGCAACCTTGTG
LOC_Os02g36720
OsAffx.2884.1.S1_at--598--4531NONE
GCCCAAGCTCGACACGTTAGAGATA
NONE
OsAffx.2884.1.S1_at--558--351Chr02:22151445..22151469 (25 bp)
ATAAGCATACCCAATCTGAAGCCAC
LOC_Os02g36720
OsAffx.2884.1.S1_at--799--1311Chr02:22151409..22151433 (25 bp)
AGATGGATCTATCGCCATATCTGAT
LOC_Os02g36720
OsAffx.2884.1.S1_at--814--6411Chr02:22151387..22151411 (25 bp)
GATCTCGCCGCGTTCATATTCGAGG
LOC_Os02g36720
OsAffx.2884.1.S1_at--236--57111Chr06:12770296..12770315 (20 bp)
GACTACCCTGTCGTTGACTATGTGG
NONE
Target Sequence 
GTCCGCCACCGTGTGAAGACAGGAGGGATTGGGAGAGAGGCGAGAGGGAGATTGGAGGGCCGGAGGGACGGAGGGTAGAG
CGCGAGATGGAGAGGCGCACTGGCGTGCTGGCCACGGTGGCTAAGGAAGTTGGCACTATATTTAGAAGTCTAATATACCT
CCTCTGGCCCAATTGCGGCCCTGGCCCTCACTCCCGCCAGGGTGGAAACTACACCCGACCCCGACCCTACGGGGGAAATT
GCCATCCCTGGACCCAAGAGTCCAAGTTATCAGCAAAGTCAGCGCTCGGCAACCTTGTGTGGCCGCCCAAGCTCGACACG
TTAGAGATAAGAGATAAGCATAAGCATACCCAATCTGAAGCCACAGAGATCAACAAGATGGATCTATCGCCATATCTGAT
CTCGCCGCGTTCATATTCGAGGAAGAAGACTACCCTGTCGTTGACTATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis