Browse Element(s) Details


Os.17181.1.S1_at

Description gb:AK105785.1
DB_XREF= gi:32990994
TID=Os.17181.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G10, full insert sequence.
FL= gb:AK105785.1 gb:AK106005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3201011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31970NANA7+19010050..19016627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g31980NANA7+19016957..19019884retrotransposon protein, putative, unclassified
LOC_Os07g31990NANA7+19025823..19028277transposon protein, putative, Mutator sub-class
LOC_Os07g32000OsAffx.19664.2.S1_at11/117+19032992..19034719hypothetical protein
LOC_Os07g32000OsAffx.19664.1.S1_at4/117+19032992..19034719hypothetical protein
LOC_Os07g32010Os.17181.1.S1_at11/117+19036155..19037919UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S1_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S2_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.24603.1.S1_x_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.12168.1.S1_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32040NANA7+19051935..19054261PCI domain containing protein
LOC_Os07g32050OsAffx.16515.1.S1_at11/117+19056349..19058158hypothetical protein
LOC_Os07g32060Os.54472.1.S1_at11/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32060OsAffx.24603.1.S1_x_at1/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17181.1.S1_at--42--4111Chr07:19037789..19037813 (25 bp)
CGAAGTAACAAGAGATGATGCCGCT
LOC_Os07g32010
Os.17181.1.S1_at--771--2211Chr07:19037796..19037820 (25 bp)
ACAAGAGATGATGCCGCTTGTACTG
LOC_Os07g32010
Os.17181.1.S1_at--900--9171Chr07:19037807..19037831 (25 bp)
TGCCGCTTGTACTGTTTGTGCCATA
LOC_Os07g32010
Os.17181.1.S1_at--448--4931Chr07:19037811..19037835 (25 bp)
GCTTGTACTGTTTGTGCCATATGCG
LOC_Os07g32010
Os.17181.1.S1_at--255--1971Chr07:19037817..19037841 (25 bp)
ACTGTTTGTGCCATATGCGTGTCTT
LOC_Os07g32010
Os.17181.1.S1_at--232--6871Chr07:19037820..19037844 (25 bp)
GTTTGTGCCATATGCGTGTCTTGTT
LOC_Os07g32010
Os.17181.1.S1_at--15--10151Chr07:19037830..19037854 (25 bp)
TATGCGTGTCTTGTTTGCACTACAG
LOC_Os07g32010
Os.17181.1.S1_at--1080--4651Chr07:19037833..19037857 (25 bp)
GCGTGTCTTGTTTGCACTACAGTAA
LOC_Os07g32010
Os.17181.1.S1_at--945--7131Chr07:19037837..19037861 (25 bp)
GTCTTGTTTGCACTACAGTAACACT
LOC_Os07g32010
Os.17181.1.S1_at--912--10792Chr11:25310952..25310972 (21 bp)
TTGTTTGCACTACAGTAACACTGAA
NONE
Os.17181.1.S1_at--909--2131Chr07:19037851..19037875 (25 bp)
ACAGTAACACTGAAATGCAGTCTTG
LOC_Os07g32010
Target Sequence 
CGAAGTAACAAGAGATGATGCCGCTTGTACTGTTTGTGCCATATGCGTGTCTTGTTTGCACTACAGTAACACTGAAATGC
AGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis