Browse Element(s) Details


Os.54472.1.S1_at

Description gb:AK105261.1
DB_XREF= gi:32990470
TID=Os.54472.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A09, full insert sequence.
FL= gb:AK105261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3206011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32000OsAffx.19664.2.S1_at11/117+19032992..19034719hypothetical protein
LOC_Os07g32000OsAffx.19664.1.S1_at4/117+19032992..19034719hypothetical protein
LOC_Os07g32010Os.17181.1.S1_at11/117+19036155..19037919UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S1_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S2_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.24603.1.S1_x_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.12168.1.S1_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32040NANA7+19051935..19054261PCI domain containing protein
LOC_Os07g32050OsAffx.16515.1.S1_at11/117+19056349..19058158hypothetical protein
LOC_Os07g32060Os.54472.1.S1_at11/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32060OsAffx.24603.1.S1_x_at1/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32070OsAffx.28706.1.S1_at11/117+19062966..19064012hypothetical protein
LOC_Os07g32080OsAffx.16516.1.S1_x_at11/117+19066616..19067680Transcription factor TFIIB repeat family protein
LOC_Os07g32090NANA7+19068709..19071327hypothetical protein
LOC_Os07g32100OsAffx.31018.3.S1_x_at11/117+19071668..19073089hypothetical protein
LOC_Os07g32100OsAffx.31018.4.S1_at4/117+19071668..19073089hypothetical protein
LOC_Os07g32100OsAffx.31018.2.S1_x_at1/117+19071668..19073089hypothetical protein
LOC_Os07g32110Os.45774.1.S1_at1/117+19073800..19076846transposon protein, putative, unclassified
LOC_Os07g32120NANA7+19081963..19082994Transcription factor TFIIB repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0046345biological_processabscisic acid catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54472.1.S1_at--94--5411Chr07:19060568..19060592 (25 bp)
GAAGCTCACGCAAGAAATGGCCCAC
LOC_Os07g32060
Os.54472.1.S1_at--810--4551Chr07:19060587..19060611 (25 bp)
GCCCACATGTCATCCATATAGCTAA
LOC_Os07g32060
Os.54472.1.S1_at--525--2251Chr07:19060615..19060639 (25 bp)
AAATACGGAGTATCAGGCAGCGAGT
LOC_Os07g32060
Os.54472.1.S1_at--39--3491Chr07:19060628..19060652 (25 bp)
CAGGCAGCGAGTATGCACAAGATAC
LOC_Os07g32060
Os.54472.1.S1_at--675--9351Chr07:19060661..19060685 (25 bp)
TCGAACTATCGACAGCATCAGGCAG
LOC_Os07g32060
Os.54472.1.S1_at--520--411Chr07:19060677..19060701 (25 bp)
ATCAGGCAGCGAGTCATCAACCGAT
LOC_Os07g32060
Os.54472.1.S1_at--8--4631Chr07:19060685..19060709 (25 bp)
GCGAGTCATCAACCGATCATCATGA
LOC_Os07g32060
Os.54472.1.S1_at--754--351Chr07:19060731..19060755 (25 bp)
ATAAGTCGGCAGTCAGATGGACGAG
LOC_Os07g32060
Os.54472.1.S1_at--675--5611Chr07:19060762..19060786 (25 bp)
GACAAGATCATCCTTATTGCCAGAT
LOC_Os07g32060
Os.54472.1.S1_at--933--10211Chr07:19060776..19060800 (25 bp)
TATTGCCAGATCCTAGAGAATGTGA
LOC_Os07g32060
Os.54472.1.S1_at--810--771Chr07:19060795..19060819 (25 bp)
ATGTGATGGGTGTATGCCAAATCCA
LOC_Os07g32060
Target Sequence 
GAAGCTCACGCAAGAAATGGCCCACATGTCATCCATATAGCTAACATAAATACGGAGTATCAGGCAGCGAGTATGCACAA
GATACGGTAAGTATCGAACTATCGACAGCATCAGGCAGCGAGTCATCAACCGATCATCATGAACAAGTGGAAGTCTGGAT
GAGATAAGTCGGCAGTCAGATGGACGAGGGGATGGACAAGATCATCCTTATTGCCAGATCCTAGAGAATGTGATGGGTGT
ATGCCAAATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis