Browse Element(s) Details


OsAffx.28706.1.S1_at

Description tigr:9635.m03149
TID=OsAffx.28706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3207011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32020Os.8143.1.S1_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S2_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.24603.1.S1_x_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.12168.1.S1_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32040NANA7+19051935..19054261PCI domain containing protein
LOC_Os07g32050OsAffx.16515.1.S1_at11/117+19056349..19058158hypothetical protein
LOC_Os07g32060Os.54472.1.S1_at11/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32060OsAffx.24603.1.S1_x_at1/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32070OsAffx.28706.1.S1_at11/117+19062966..19064012hypothetical protein
LOC_Os07g32080OsAffx.16516.1.S1_x_at11/117+19066616..19067680Transcription factor TFIIB repeat family protein
LOC_Os07g32090NANA7+19068709..19071327hypothetical protein
LOC_Os07g32100OsAffx.31018.3.S1_x_at11/117+19071668..19073089hypothetical protein
LOC_Os07g32100OsAffx.31018.4.S1_at4/117+19071668..19073089hypothetical protein
LOC_Os07g32100OsAffx.31018.2.S1_x_at1/117+19071668..19073089hypothetical protein
LOC_Os07g32110Os.45774.1.S1_at1/117+19073800..19076846transposon protein, putative, unclassified
LOC_Os07g32120NANA7+19081963..19082994Transcription factor TFIIB repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28706.1.S1_at--85--6191Chr07:19063053..19063077 (25 bp)
GAGGAGCTACTGGACTTCTGCGGCA
LOC_Os07g32070
OsAffx.28706.1.S1_at--906--1991Chr07:19063111..19063135 (25 bp)
ACTCGTCGCATTCCAGGGAGGCCAT
LOC_Os07g32070
OsAffx.28706.1.S1_at--909--1871Chr07:19063153..19063177 (25 bp)
ACGTCGCCGCTGTGGTTTTGGACTT
LOC_Os07g32070
OsAffx.28706.1.S1_at--31--10451Chr07:19063170..19063194 (25 bp)
TTGGACTTGTTCAGTACCACGTTCC
LOC_Os07g32070
OsAffx.28706.1.S1_at--715--8631Chr07:19063223..19063247 (25 bp)
TGGGTACGTGTACTTCACTTCCACC
LOC_Os07g32070
OsAffx.28706.1.S1_at--78--5771Chr07:19063323..19063347 (25 bp)
GACGTCGTCGACTTACTAGGGTTGC
LOC_Os07g32070
OsAffx.28706.1.S1_at--177--9891Chr07:19063336..19063360 (25 bp)
TACTAGGGTTGCTGTCAGTGCCGGC
LOC_Os07g32070
OsAffx.28706.1.S1_at--308--10431Chr07:19063405..19063429 (25 bp)
TTATGGGTACCATATGCCCACACGG
LOC_Os07g32070
OsAffx.28706.1.S1_at--874--2911Chr07:19063902..19063926 (25 bp)
AAGGATGATTTCGTCTTCCTGCCAG
LOC_Os07g32070
OsAffx.28706.1.S1_at--1148--8191Chr07:19063944..19063968 (25 bp)
GGCAACCTCAACTTTATTACGGACG
LOC_Os07g32070
OsAffx.28706.1.S1_at--1079--10192Chr07:19063958..19063982 (25 bp)
TATTACGGACGACTTCAGCAAGATC
LOC_Os07g32070
Target Sequence 
GAGGAGCTACTGGACTTCTGCGGCAGCGAGGACTTCATCTCCCGATTCATGCAGCAGCACTCGTCGCATTCCAGGGAGGC
CATCTTCGGCCTGGAATCCCACGTCGCCGCTGTGGTTTTGGACTTGTTCAGTACCACGTTCCTCGACGTCACCTGCAACC
TCGACCTCCCTGGGTACGTGTACTTCACTTCCACCGCTTCTCTGCTCTCGCTCGTGCTGCGGTTGCTGGTGTTGGACCAA
GAGATGCTTGTGGATTTCGAGGAGATGGAAGACGTCGTCGACTTACTAGGGTTGCTGTCAGTGCCGGCGACTCTGTTGCC
GACGCCTGTGATAAAGAAGGATTGTGTGGAGATTATGGGTACCATATGCCCACACGGCAAGGATGATTTCGTCTTCCTGC
CAGGGCAGGCGTCCCACTTCGGCAACCTCAACTTTATTACGGACGACTTCAGCAAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis