Browse Element(s) Details


OsAffx.19664.2.S1_at

Description tigr:9635.m03141
TID=OsAffx.19664.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3200011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31970NANA7+19010050..19016627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g31980NANA7+19016957..19019884retrotransposon protein, putative, unclassified
LOC_Os07g31990NANA7+19025823..19028277transposon protein, putative, Mutator sub-class
LOC_Os07g32000OsAffx.19664.2.S1_at11/117+19032992..19034719hypothetical protein
LOC_Os07g32000OsAffx.19664.1.S1_at4/117+19032992..19034719hypothetical protein
LOC_Os07g32010Os.17181.1.S1_at11/117+19036155..19037919UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S1_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S2_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.24603.1.S1_x_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.12168.1.S1_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32040NANA7+19051935..19054261PCI domain containing protein
LOC_Os07g32050OsAffx.16515.1.S1_at11/117+19056349..19058158hypothetical protein
LOC_Os07g32060Os.54472.1.S1_at11/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32060OsAffx.24603.1.S1_x_at1/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19664.2.S1_at--1046--4592Chr12:8172173..8172195 (23 bp)
GCGAGGGAGGGCACTCGGCCGAGAA
NONE
OsAffx.19664.2.S1_at--1161--6651Chr07:19034140..19034162 (23 bp)
GTTGAAGCTGATCCAAGCTGGTGCA
LOC_Os07g32000
OsAffx.19664.2.S1_at--658--8612Chr12:8173561..8173581 (21 bp)
TGGTGCAACTGCTGGGACTGAGATT
NONE
OsAffx.19664.2.S1_at--757--5152Chr12:8173561..8173585 (25 bp)
GCAACTGCTGGGACTGAGATTCAAC
NONE
OsAffx.19664.2.S1_at--669--8112Chr12:8173571..8173595 (25 bp)
GGACTGAGATTCAACATGAGACTGA
NONE
OsAffx.19664.2.S1_at--666--692Chr12:8173586..8173610 (25 bp)
ATGAGACTGAGTTTGCACCTGAGAT
NONE
OsAffx.19664.2.S1_at--703--6072Chr12:8173594..8173618 (25 bp)
GAGTTTGCACCTGAGATTGAGATTG
NONE
OsAffx.19664.2.S1_at--226--10771Chr07:19033226..19033250 (25 bp)
TTGAGATTGCACCTACAGAGAAGAC
LOC_Os07g32000
OsAffx.19664.2.S1_at--534--1751Chr07:19033049..19033240 (25 bp)
ACCTACAGAGAAGACATGTACTTGC
LOC_Os07g32000
OsAffx.19664.2.S1_at--1124--7012Chr12:8173803..8174063 (25 bp)
GTACTTGCAATGCATCTCCATACCT
NONE
OsAffx.19664.2.S1_at--519--10731Chr07:19033028..19033052 (25 bp)
TTGCAATGCATCTCCATACCTGTCA
LOC_Os07g32000
Target Sequence 
GCGAGGGAGGGCACTCGGCCGAGAAGGATGGAAGTGGTTGTAATTTCTGGTATTGGGAGGAAGCCTACATCAAATTCCTG
AAGAGGAGTGGCTTCATTGATGAAGCTACCTGTGCAGAGTTGCTGAAAGAGGCCAAAATGAAGGATGGAGATGAGATGAA
GAAGAGCAGTGCTCAGGAATTCAAGAAGGAACCCGATGTTGGACATTTCAAACAGCTGGAAAATATGATTTTCATTTTGA
CCAAGATGATGGTGTTGTTGAAGCTGATCCAAGCTGGTGCAACTGCTGGGACTGAGATTCAACATGAGACTGAGTTTGCA
CCTGAGATTGAGATTGCACCTACAGAGAAGACATGTACTTGCAATGCATCTCCATACCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19664.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis