Browse Element(s) Details


Os.25866.2.S1_at

Description gb:AK065043.1
DB_XREF= gi:32975061
TID=Os.25866.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs D49322(S16545),AU174133(S16545)~similar to Arabidopsis thaliana chromosome 5, At5g22280~unknown protein (P0021G06.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001H21, full insert sequence.
FL= gb:AK065043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1465011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g14640OsAffx.16264.1.S1_at8/117+8348554..8349231hypothetical protein
LOC_Os07g14650Os.25866.1.S1_x_at11/117+8350388..8353151expressed protein
LOC_Os07g14650Os.25866.2.S1_at11/117+8350388..8353151expressed protein
LOC_Os07g14660OsAffx.22756.1.S1_s_at11/117+8356892..8357509Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14670OsAffx.25729.2.S1_x_at2/117+8359369..8359740transposon protein, putative, unclassified
LOC_Os07g14680OsAffx.10172.1.S1_at10/117+8361096..8364868hypothetical protein
LOC_Os07g14690OsAffx.22403.1.S1_at10/117+8366168..8367375hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25866.2.S1_at--276--5291Chr07:8352573..8352597 (25 bp)
GAAGGACAGTAATTTTATAGCTAAC
LOC_Os07g14650
Os.25866.2.S1_at--1008--10171Chr07:8352588..8352612 (25 bp)
TATAGCTAACCTGGAAATCATAAAG
LOC_Os07g14650
Os.25866.2.S1_at--77--671Chr07:8352613..8352637 (25 bp)
ATGCAAGATTTGACTATACTGGTGT
LOC_Os07g14650
Os.25866.2.S1_at--804--2031Chr07:8352625..8352649 (25 bp)
ACTATACTGGTGTCTGTTGTTTGAA
LOC_Os07g14650
Os.25866.2.S1_at--619--7731Chr07:8352633..8352657 (25 bp)
GGTGTCTGTTGTTTGAATACGTTCT
LOC_Os07g14650
Os.25866.2.S1_at--849--3091Chr07:8352648..8352672 (25 bp)
AATACGTTCTTCTATCTTGCTCTAT
LOC_Os07g14650
Os.25866.2.S1_at--824--3691Chr07:8352659..8352683 (25 bp)
CTATCTTGCTCTATATTGGTTTACA
LOC_Os07g14650
Os.25866.2.S1_at--240--31Chr07:8352673..8352697 (25 bp)
ATTGGTTTACAAGGCCATGATTCTT
LOC_Os07g14650
Os.25866.2.S1_at--756--6571Chr07:8352691..8352715 (25 bp)
GATTCTTTGCATAGTTTTCTCATTG
LOC_Os07g14650
Os.25866.2.S1_at--963--10571Chr07:8352707..8352731 (25 bp)
TTCTCATTGAAGATTTACATGCTAT
LOC_Os07g14650
Os.25866.2.S1_at--855--9871Chr07:8352722..8352746 (25 bp)
TACATGCTATTTTTCTATCTACAGA
LOC_Os07g14650
Target Sequence 
GAAGGACAGTAATTTTATAGCTAACCTGGAAATCATAAAGATGCAAGATTTGACTATACTGGTGTCTGTTGTTTGAATAC
GTTCTTCTATCTTGCTCTATATTGGTTTACAAGGCCATGATTCTTTGCATAGTTTTCTCATTGAAGATTTACATGCTATT
TTTCTATCTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25866.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis