Browse Element(s) Details


OsAffx.10172.1.S1_at

Description tigr:9635.m01458
TID=OsAffx.10172.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1468010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g14640OsAffx.16264.1.S1_at8/117+8348554..8349231hypothetical protein
LOC_Os07g14650Os.25866.1.S1_x_at11/117+8350388..8353151expressed protein
LOC_Os07g14650Os.25866.2.S1_at11/117+8350388..8353151expressed protein
LOC_Os07g14660OsAffx.22756.1.S1_s_at11/117+8356892..8357509Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14670OsAffx.25729.2.S1_x_at2/117+8359369..8359740transposon protein, putative, unclassified
LOC_Os07g14680OsAffx.10172.1.S1_at10/117+8361096..8364868hypothetical protein
LOC_Os07g14690OsAffx.22403.1.S1_at10/117+8366168..8367375hypothetical protein
LOC_Os07g14700Os.31042.1.S1_at8/117+8380274..8381360Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10172.1.S1_at--194--7371Chr07:8364744..8364768 (25 bp)
GTGACATCGCGCAAACCACCGTGAC
LOC_Os07g14680
OsAffx.10172.1.S1_at--325--2371Chr07:8364732..8364756 (25 bp)
AAACCACCGTGACCATGGACACCAG
LOC_Os07g14680
OsAffx.10172.1.S1_at--522--1652Chr02:15822550..15823043 (25 bp)
AGCCTCGTCTTACCGGAGTTGCCAT
NONE
OsAffx.10172.1.S1_at--757--6692Chr10:16941630..16941653 (24 bp)
GTTCGAGCTGCAAGAGTTCAGCCCA
NONE
OsAffx.10172.1.S1_at--318--2791Chr07:8364621..8364645 (25 bp)
AAGAGTTCAGCCCAGCAATGTCGTT
LOC_Os07g14680
OsAffx.10172.1.S1_at--845--1471Chr07:8364608..8364632 (25 bp)
AGCAATGTCGTTGCCGCACAGGCTG
LOC_Os07g14680
OsAffx.10172.1.S1_at--886--7671Chr07:8364583..8364607 (25 bp)
GGGTTGCCACTGAGATCCAGCATCG
LOC_Os07g14680
OsAffx.10172.1.S1_at--464--1971Chr07:8364575..8364599 (25 bp)
ACTGAGATCCAGCATCGTCAGCGAC
LOC_Os07g14680
OsAffx.10172.1.S1_at--200--1651Chr07:8364556..8364580 (25 bp)
AGCGACCTTATCTTACCAAGCAGGG
LOC_Os07g14680
OsAffx.10172.1.S1_at--975--4791NONE
GCTCAGGTTGAGCTTAGAAATTCTG
NONE
OsAffx.10172.1.S1_at--797--4652Chr07:8364448..8364941 (25 bp)
GCGTGACACGTCTCGGCTCGGGCCA
NONE
Target Sequence 
GTGACATCGCGCAAACCACCGTGACCATGGACACCAGCAGCGCGGCGACGACGGAGAGCGTGACGGTGAGCACCAGCCTC
GTCTTACCGGAGTTGCCATCGCCGGTGATGGTGTTCGAGCTGCAAGAGTTCAGCCCAGCAATGTCGTTGCCGCACAGGCT
GGGGTTGCCACTGAGATCCAGCATCGTCAGCGACCTTATCTTACCAAGCAGGGGTGTCACCTCGCCGGAGAGGTTGTTGC
TGCTCAGGTTGAGCTTAGAAATTCTGGTTCGTGAATTTCTGGGCGTGACACGTCTCGGCTCGGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis