Browse Element(s) Details


OsAffx.16264.1.S1_at

Description gb:NM_186854.1
DB_XREF= gi:34900793
GEN=P0021G06.21
TID=OsAffx.16264.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0021G06.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g146408/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g14640OsAffx.16264.1.S1_at8/117+8348554..8349231hypothetical protein
LOC_Os07g14650Os.25866.1.S1_x_at11/117+8350388..8353151expressed protein
LOC_Os07g14650Os.25866.2.S1_at11/117+8350388..8353151expressed protein
LOC_Os07g14660OsAffx.22756.1.S1_s_at11/117+8356892..8357509Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14670OsAffx.25729.2.S1_x_at2/117+8359369..8359740transposon protein, putative, unclassified
LOC_Os07g14680OsAffx.10172.1.S1_at10/117+8361096..8364868hypothetical protein
LOC_Os07g14690OsAffx.22403.1.S1_at10/117+8366168..8367375hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16264.1.S1_at--39--6091Chr07:8348856..8348880 (25 bp)
GAGTCGTTTGTTGTCGTGGTCCCGC
LOC_Os07g14640
OsAffx.16264.1.S1_at--120--7371Chr07:8348871..8348895 (25 bp)
GTGGTCCCGCGGATTAATCGACAAT
LOC_Os07g14640
OsAffx.16264.1.S1_at--1020--5251Chr07:8348904..8348928 (25 bp)
GAATCCTTCCATGGGACTGTGGGAC
LOC_Os07g14640
OsAffx.16264.1.S1_at--323--971Chr07:8348941..8348965 (25 bp)
AGGAGCTTCTTCCTCGAGGCTGCCA
LOC_Os07g14640
OsAffx.16264.1.S1_at--1037--5091Chr07:8349023..8349047 (25 bp)
GCACGGCAACCGGTGGTAGCATGAA
LOC_Os07g14640
OsAffx.16264.1.S1_at--1002--2111Chr07:8349103..8349127 (25 bp)
ACAGGCGGTCTTGCTGCAGGAGCTC
LOC_Os07g14640
OsAffx.16264.1.S1_at--652--8551Chr07:8349169..8349193 (25 bp)
TGGAGGCGCCGATTCTACGAGAGAA
LOC_Os07g14640
OsAffx.16264.1.S1_at--987--9931Chr07:8349184..8349208 (25 bp)
TACGAGAGAAACTTCGCGTCAGATG
LOC_Os07g14640
OsAffx.16264.1.S1_at--218--10331Chr07:8349590..8349614 (25 bp)
TTTAAGGCGAGGCATATCCCCAACG
NONE
OsAffx.16264.1.S1_at--1074--3531Chr07:8349623..8349647 (25 bp)
CATCCGTTCCTCGTCAAAAAGCTAA
NONE
OsAffx.16264.1.S1_at--131--9791Chr07:8349645..8349669 (25 bp)
TAACGAAACTACGTGGCTCTCTGCC
NONE
Target Sequence 
GAGTCGTTTGTTGTCGTGGTCCCGCGGATTAATCGACAATGGATTGATGAATCCTTCCATGGGACTGTGGGACATGGTGC
TGGTGAGGAGCTTCTTCCTCGAGGCTGCCATCTCGGAGCGGCGGCTCGTCATGCTTTCCCAGCCGCGCTCGTCCGAGTGG
TGCGGCCGCACGGCAACCGGTGGTAGCATGAAGGAGGTCCTGGCCATCGTGCGCCCGTGCGGTCGGGTGGAGCCGTCGCT
ATGGGCGACAGGCGGTCTTGCTGCAGGAGCTCCCGGCGCGCATGGTGGTGGCCGTTGGGCTTCGACCGTGCGGTGGAGGC
GCCGATTCTACGAGAGAAACTTCGCGTCAGATGGGGAGGGAATAAGGTNGNGNTNNTCGGGTAGGCTCTTCTCTCCAATC
TGCCCCCTCACCATCTTCTTCCCCAGCGCAGGAGCATCAACGGCGTGGGGCGACGGCTTTAAGGCGAGGCATATCCCCAA
CGCGGCTCCTCATCCGTTCCTCGTCAAAAAGCTAACGAAACTACGTGGCTCTCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis