Browse Element(s) Details


OsAffx.25729.2.S1_x_at

Description tigr:9635.m00239
TID=OsAffx.25729.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0325011/11Ovule development protein aintegumenta, putative, expressed
LOC_Os07g146702/11transposon protein, putative, unclassified
LOC_Os01g072701/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03230Os.48081.1.S1_at11/117+1272854..1277016Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03260OsAffx.30957.1.S1_s_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.28245.1.S1_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.30957.1.S1_x_at1/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03270Os.47860.1.S1_at11/117+1312066..1314743DnaJ domain containing protein, expressed
LOC_Os07g03279Os.11164.1.S1_at11/117+1317333..1318097SCP-like extracellular protein, expressed
LOC_Os07g03288Os.50993.1.S1_at11/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03288Os.51641.1.S1_x_at5/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03297OsAffx.22759.1.S1_at4/117+1324474..1325997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03310OsAffx.26144.3.S1_s_at11/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.1.S1_x_at6/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.3.S1_at5/117+1327207..1332928transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007276biological_processgametogenesis
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0042127biological_processregulation of cell proliferation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25729.2.S1_x_at--1090--9671Chr07:1301579..1301603 (25 bp)
TCACCCGCTACGACGTCGACAAGAT
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--21--5771Chr07:1301590..1301614 (25 bp)
GACGTCGACAAGATCATGGCCAGCA
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--1045--9351Chr07:1301594..1301618 (25 bp)
TCGACAAGATCATGGCCAGCAACAC
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--1114--4551Chr07:1301690..1301714 (25 bp)
GCGCCGGCGCCATTGTCTCGGTGCA
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--61--8411Chr07:1301695..1301719 (25 bp)
GGCGCCATTGTCTCGGTGCACTCCG
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--1108--1854Chr09:6404332..6404368 (25 bp)
ACGACGTCGTGCTGTCCGGCGCCGA
NONE
OsAffx.25729.2.S1_x_at--988--1512Chr07:1301885..1301909 (25 bp)
AGCAGCAGCAGCACATGTCCATGTC
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--770--9333Chr07:1301920..1301944 (25 bp)
TCGCTGGTGACGAGCCTGAGCAACT
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--357--1872Chr07:1301929..1301953 (25 bp)
ACGAGCCTGAGCAACTCGCGCGAGG
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--912--1511Chr07:1302026..1302050 (25 bp)
AGCAGCAGGCGTCGACCAAGCTCAT
LOC_Os07g03250
OsAffx.25729.2.S1_x_at--314--911Chr07:1302032..1302056 (25 bp)
AGGCGTCGACCAAGCTCATGGCGGC
LOC_Os07g03250
Target Sequence 
TCACCCGCTACGACGTCGACAAGATCATGGCCAGCAACACCCTCCTCCCCGCCGACCTCGCCCGCCGCAACGCCGCCACC
ACCACCTCCAAGGACGACCACTCCGCCGCCGGCGCCGGCGCCATTGTCTCGGTGCACTCCGCCGCCGACATCGCCGTCGC
CGACACCCTCTGGAAGGCCACCACTGCCCCGAGGCAGCAGCAGCAGCACCACGACGACGTCGTGCTGTCCGGCGCCGACC
AGGCCGCATTCTCCGTCCTCCACGACCTCGTCGCCGTCGACGCCGCGGCGGCGCACCAGCAGCAGCAGCAGCAGCAGCAC
ATGTCCATGTCGGCGGCGTCGTCGCTGGTGACGAGCCTGAGCAACTCGCGCGAGGGGAGCCCCGACCGCGGCGGCGGCCT
CTCCATGCTCTTCGCCAAGCCGTCGCCCGCCGTGGCGGCGTCGGCGCAGCAGCAGGCGTCGACCAAGCTCATGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25729.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis