Browse Element(s) Details


Os.56321.1.S1_at

Description gb:AK109848.1
DB_XREF= gi:32995057
TID=Os.56321.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F05, full insert sequence.
FL= gb:AK109848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0325011/11Ovule development protein aintegumenta, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03230Os.48081.1.S1_at11/117+1272854..1277016Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03260OsAffx.30957.1.S1_s_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.28245.1.S1_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.30957.1.S1_x_at1/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03270Os.47860.1.S1_at11/117+1312066..1314743DnaJ domain containing protein, expressed
LOC_Os07g03279Os.11164.1.S1_at11/117+1317333..1318097SCP-like extracellular protein, expressed
LOC_Os07g03288Os.50993.1.S1_at11/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03288Os.51641.1.S1_x_at5/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03297OsAffx.22759.1.S1_at4/117+1324474..1325997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03310OsAffx.26144.3.S1_s_at11/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.1.S1_x_at6/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.3.S1_at5/117+1327207..1332928transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007276biological_processgametogenesis
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0042127biological_processregulation of cell proliferation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56321.1.S1_at--750--8312Chr07:1302179..1302203 (25 bp)
GGCTCACCGGAGTAGTAATTAGCTA
LOC_Os07g03250
Os.56321.1.S1_at--867--4892Chr07:1302242..1302266 (25 bp)
GCTTAATTAGCTCGTGTTTAGTTGG
LOC_Os07g03250
Os.56321.1.S1_at--314--1071Chr07:1302274..1302298 (25 bp)
AGGGTTCTTGGTTGCTCGGCGACAT
LOC_Os07g03250
Os.56321.1.S1_at--509--9431Chr07:1302289..1302313 (25 bp)
TCGGCGACATGATTAGCTAAGCTAG
LOC_Os07g03250
Os.56321.1.S1_at--64--4631Chr07:1302313..1302337 (25 bp)
GCGATGTAGTAGTAGCACTAGCAGC
LOC_Os07g03250
Os.56321.1.S1_at--1009--10492Chr07:1302349..1302373 (25 bp)
TTAATTAGTATCACTCAAGGCGAGG
LOC_Os07g03250
Os.56321.1.S1_at--231--4071Chr07:1302369..1302393 (25 bp)
CGAGGAAACCGACGCACGCCATGGC
LOC_Os07g03250
Os.56321.1.S1_at--861--8411Chr07:1302436..1302460 (25 bp)
GGCCGCCATGTATCAGAGAGCTCGA
LOC_Os07g03250
Os.56321.1.S1_at--969--2171Chr07:1302489..1302513 (25 bp)
ACACGGAGGCCGGAGATCTATCGAG
LOC_Os07g03250
Os.56321.1.S1_at--548--8051Chr07:1302500..1302524 (25 bp)
GGAGATCTATCGAGGCGGTGCTTCT
LOC_Os07g03250
Os.56321.1.S1_at--164--10171Chr07:1302572..1302596 (25 bp)
TATAGCCTCACCAAATTAATTTCTC
LOC_Os07g03250
Target Sequence 
GGCTCACCGGAGTAGTAATTAGCTAGCTATAGCTAGAGCTAGGCAACGACGACGACGACACTAGCTTAATTAGCTCGTGT
TTAGTTGGTTAATTTAGGGTTCTTGGTTGCTCGGCGACATGATTAGCTAAGCTAGCGATGTAGTAGTAGCACTAGCAGCT
AGTTGGAGTATTAATTAGTATCACTCAAGGCGAGGAAACCGACGCACGCCATGGCCGCGGCCTCTCCCCCACCTTTCCTT
CTTCTCCGGCGACGGCCGGCCGCCATGTATCAGAGAGCTCGATCGGCGCCGGAGAAGAAGGGTTTTTGTAACACGGAGGC
CGGAGATCTATCGAGGCGGTGCTTCTCCTCCAAAATCCAAAACTATATATCTTATATTAATTAATTAATTAATTATAGCC
TCACCAAATTAATTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis