Browse Element(s) Details


Os.47860.1.S1_at

Description gb:AK068837.1
DB_XREF= gi:32978862
TID=Os.47860.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159A01, full insert sequence.
FL= gb:AK068837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0327011/11DnaJ domain containing protein, expressed
LOC_Os02g418801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03260OsAffx.30957.1.S1_s_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.28245.1.S1_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.30957.1.S1_x_at1/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03270Os.47860.1.S1_at11/117+1312066..1314743DnaJ domain containing protein, expressed
LOC_Os07g03279Os.11164.1.S1_at11/117+1317333..1318097SCP-like extracellular protein, expressed
LOC_Os07g03288Os.50993.1.S1_at11/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03288Os.51641.1.S1_x_at5/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03297OsAffx.22759.1.S1_at4/117+1324474..1325997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03310OsAffx.26144.3.S1_s_at11/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.1.S1_x_at6/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.3.S1_at5/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03319OsAffx.16067.1.S1_at2/117+1333665..1334266SCP-like extracellular protein, expressed
LOC_Os07g03328OsAffx.28247.1.S1_x_at11/117+1334496..1334942hypothetical protein
LOC_Os07g03337Os.46306.1.S1_x_at8/117+1336276..1339101transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47860.1.S1_at--693--8431Chr07:1313582..1313606 (25 bp)
GGCCATAATCCAAGCTACTATCAGA
LOC_Os07g03270
Os.47860.1.S1_at--637--6331Chr07:1313531..1313555 (25 bp)
GATGCAGAGTCATTTTATGCTAACC
LOC_Os07g03270
Os.47860.1.S1_at--325--10311Chr07:1313496..1313520 (25 bp)
TTTCAGATCGATGCCCAGGGAAGCC
LOC_Os07g03270
Os.47860.1.S1_at--237--10491Chr07:1313466..1313490 (25 bp)
TTACACTATGTCACAGCACTACTCT
LOC_Os07g03270
Os.47860.1.S1_at--411--6611Chr07:1312980..1313004 (25 bp)
GATTGGAGCCATTCTCAGATGCTGA
LOC_Os07g03270
Os.47860.1.S1_at--1030--8191Chr07:1312314..1312338 (25 bp)
GGAAGTTTATGAATGCGCTCACAAT
LOC_Os07g03270
Os.47860.1.S1_at--1151--4571Chr07:1312300..1312324 (25 bp)
GCGCTCACAATGGAGGGCTGTTGTA
LOC_Os07g03270
Os.47860.1.S1_at--31--2411Chr07:1312252..1312276 (25 bp)
AAACATGTCTTAACCTTGATTGCTG
LOC_Os07g03270
Os.47860.1.S1_at--516--2632Chr02:25169734..25169753 (20 bp)
AACCTTGATTGCTGTTTTGCTTCTT
LOC_Os02g41880
Os.47860.1.S1_at--338--10051Chr07:1312187..1312211 (25 bp)
TAGTTATCTGTTGTGGGTGCTGAAC
LOC_Os07g03270
Os.47860.1.S1_at--553--9651Chr07:1312134..1312158 (25 bp)
TCAGACCAGCTGTTGTAGGACATGC
LOC_Os07g03270
Target Sequence 
GGCCATAATCCAAGCTACTATCAGAATAGTCGAAGAGAGGAGTGGTACTGGGATGCAGAGTCATTTTATGCTAACCAAAG
AACAAATTTCAGATCGATGCCCAGGGAAGCCATGGNTTACACTATGTCACAGCACTACTCTNTCTTGGNTCTTGACAGGT
CAAGATTGGAGCCATTCTCAGATGCTGAAATTAAGAATGCATTTAGGAGAAAAGCGATGGAGTATCATCCAGATCAAAAC
CAACATAACAAAGAGTTTGCTGAGGCAAAATTCAAAGAGGTCATGGATTCCTATGAAGCAATAAAATTAGAAAGGCAAAA
TGGAAGTTTATGAATGCGCTCACAATGGAGGGCTGTTGTATATAAGGCGTTTGACACAAGATAAAACATGTCTTAACCTT
GATTGCTGTTTTGCTTCTTTTTTCACTATTTATGTAAGCAACAACAAATAGTTATCTGTTGTGGGTGCTGAACNGCNGAT
TGTTGCCNAGATATCTAGCTGTCAGACCAGCTGTTGTAGGACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis