Browse Element(s) Details


OsAffx.16067.1.S1_at

Description tigr:9635.m00284
TID=OsAffx.16067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SCP-like extracellular protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0360011/11SCP-like extracellular protein, expressed
LOC_Os07g034092/11SCP-like extracellular protein
LOC_Os07g033192/11SCP-like extracellular protein, expressed
LOC_Os07g034992/11SCP-like extracellular protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03560OsAffx.22848.3.S1_x_at2/117+1419611..1425741retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03570Os.43567.1.S1_x_at6/117+1426561..1427396transposon protein, putative, unclassified
LOC_Os07g03570Os.29987.1.S1_at4/117+1426561..1427396transposon protein, putative, unclassified
LOC_Os07g03570Os.38172.1.S1_x_at3/117+1426561..1427396transposon protein, putative, unclassified
LOC_Os07g03580Os.51496.1.S1_at11/117+1430983..1431703SCP-like extracellular protein, expressed
LOC_Os07g03590Os.51641.1.S1_at11/117+1435591..1436446Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03590Os.51641.1.S1_x_at11/117+1435591..1436446Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03600OsAffx.16067.1.S1_at11/117+1442638..1443195SCP-like extracellular protein, expressed
LOC_Os07g03610NANA7+1447528..1448040SCP-like extracellular protein, expressed
LOC_Os07g03620NANA7+1450255..1450731SCP-like extracellular protein
LOC_Os07g03630OsAffx.22848.4.S1_at2/117+1459017..1464974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03630OsAffx.22848.3.S1_x_at1/117+1459017..1464974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03630OsAffx.22848.4.S1_x_at1/117+1459017..1464974retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16067.1.S1_at--217--4591Chr07:1442668..1442692 (25 bp)
GCGCAGAAAGCCTTTGCCCTCGTGC
LOC_Os07g03600
OsAffx.16067.1.S1_at--682--5031Chr07:1442670..1442694 (25 bp)
GCAGAAAGCCTTTGCCCTCGTGCTG
LOC_Os07g03600
OsAffx.16067.1.S1_at--431--4591Chr07:1442890..1442914 (25 bp)
GCGCACTCCAACAGCGAGGACCTGG
LOC_Os07g03600
OsAffx.16067.1.S1_at--545--1991Chr07:1442894..1442918 (25 bp)
ACTCCAACAGCGAGGACCTGGGCTA
LOC_Os07g03600
OsAffx.16067.1.S1_at--744--9211Chr07:1442896..1442920 (25 bp)
TCCAACAGCGAGGACCTGGGCTACG
LOC_Os07g03600
OsAffx.16067.1.S1_at--994--4371Chr07:1442897..1442921 (25 bp)
CCAACAGCGAGGACCTGGGCTACGG
LOC_Os07g03600
OsAffx.16067.1.S1_at--512--4691Chr07:1442968..1442992 (25 bp)
GCGGCGGCCGCGGTCAGCAAATGGA
LOC_Os07g03600
OsAffx.16067.1.S1_at--149--8351Chr07:1442970..1442994 (25 bp)
GGCGGCCGCGGTCAGCAAATGGATG
LOC_Os07g03600
OsAffx.16067.1.S1_at--938--4211Chr07:1442975..1442999 (25 bp)
CCGCGGTCAGCAAATGGATGGAGGA
LOC_Os07g03600
OsAffx.16067.1.S1_at--625--7034Chr07:1443015..1443039 (25 bp)
GTACAGCAGCAACACGTGCACGAGG
LOC_Os07g03600
OsAffx.16067.1.S1_at--379--9874Chr07:1443016..1443040 (25 bp)
TACAGCAGCAACACGTGCACGAGGG
LOC_Os07g03600
Target Sequence 
GCGCAGAAAGCCTTTGCCCTCGTGCTGCTGGCGGCGGCGACGCTGGCCATGGCGGCCAGCACGGCGGCGGCGCAGAGCTC
GCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGCCGGCCTCCCCGACGTGGCGTGGAGCACGA
CGCTGCAGGCGTTCGCGGAGAGCTACGTGGCGCAGCTCGCCGCCGCCACCACCTGCAGCCTCGCGCACTCCAACAGCGAG
GACCTGGGCTACGGCGAGAACCTGTACGGCCCGGCCGCCGCCGGCAGCAGCGCGGCGACGGCGGCGGCCGCGGTCAGCAA
ATGGATGGAGGAGAAGGCGGACTACGTGTACAGCAGCAACACGTGCACGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis