Browse Element(s) Details

Os.51641.1.S1_at

Description

gb:AK063248.1
DB_XREF= gi:32973266
TID=Os.51641.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-H01, full insert sequence.
FL= gb:AK063248.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g03590	11/11	Basic form of pathogenesis-related protein 1 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g03530	Os.45976.1.S1_at	5/11	7	+	1408025..1411299	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03530	Os.45976.1.S1_x_at	2/11	7	+	1408025..1411299	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03540	OsAffx.20823.2.S1_at	5/11	7	+	1412465..1413393	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03540	OsAffx.20823.2.S1_x_at	5/11	7	+	1412465..1413393	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03550	Os.43567.1.S1_x_at	4/11	7	+	1416654..1417272	transposon protein, putative, unclassified
LOC_Os07g03550	Os.29987.1.S1_at	4/11	7	+	1416654..1417272	transposon protein, putative, unclassified
LOC_Os07g03550	Os.38172.1.S1_x_at	1/11	7	+	1416654..1417272	transposon protein, putative, unclassified
LOC_Os07g03560	OsAffx.22848.3.S1_x_at	2/11	7	+	1419611..1425741	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03570	Os.43567.1.S1_x_at	6/11	7	+	1426561..1427396	transposon protein, putative, unclassified
LOC_Os07g03570	Os.29987.1.S1_at	4/11	7	+	1426561..1427396	transposon protein, putative, unclassified
LOC_Os07g03570	Os.38172.1.S1_x_at	3/11	7	+	1426561..1427396	transposon protein, putative, unclassified
LOC_Os07g03580	Os.51496.1.S1_at	11/11	7	+	1430983..1431703	SCP-like extracellular protein, expressed
LOC_Os07g03590	Os.51641.1.S1_at	11/11	7	+	1435591..1436446	Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03590	Os.51641.1.S1_x_at	11/11	7	+	1435591..1436446	Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03600	OsAffx.16067.1.S1_at	11/11	7	+	1442638..1443195	SCP-like extracellular protein, expressed
LOC_Os07g03610	NA	NA	7	+	1447528..1448040	SCP-like extracellular protein, expressed
LOC_Os07g03620	NA	NA	7	+	1450255..1450731	SCP-like extracellular protein
LOC_Os07g03630	OsAffx.22848.4.S1_at	2/11	7	+	1459017..1464974	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03630	OsAffx.22848.3.S1_x_at	1/11	7	+	1459017..1464974	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03630	OsAffx.22848.4.S1_x_at	1/11	7	+	1459017..1464974	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response
GO:0009627	biological_process	systemic acquired resistance
GO:0005576	cellular_component	extracellular region

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51641.1.S1_at--248--981	1	Chr07:1436216..1436240 (25 bp)	TAACGTATTACGTATATGCTATGGT	LOC_Os07g03590
Os.51641.1.S1_at--314--1039	1	Chr07:1436248..1436272 (25 bp)	TTTTGCTACTATACTTATATATTGT	LOC_Os07g03590
Os.51641.1.S1_at--909--1021	1	Chr07:1436267..1436291 (25 bp)	TATTGTTTGTACGTAATCGATCTAT	LOC_Os07g03590
Os.51641.1.S1_at--96--305	1	Chr07:1436281..1436305 (25 bp)	AATCGATCTATAGATATATATGCGC	LOC_Os07g03590
Os.51641.1.S1_at--533--61	1	Chr07:1436300..1436324 (25 bp)	ATGCGCATATATGTGCGAACTATAT	LOC_Os07g03590
Os.51641.1.S1_at--73--877	1	Chr07:1436343..1436367 (25 bp)	TGTATGTATGCATATCTGCATGCGT	LOC_Os07g03590
Os.51641.1.S1_at--641--1013	1	Chr07:1436355..1436379 (25 bp)	TATCTGCATGCGTATATAAGTGTGT	LOC_Os07g03590
Os.51641.1.S1_at--523--61	1	Chr07:1436362..1436386 (25 bp)	ATGCGTATATAAGTGTGTGTCGGAT	LOC_Os07g03590
Os.51641.1.S1_at--650--109	1	Chr07:1436373..1436397 (25 bp)	AGTGTGTGTCGGATGGAATAAGTAC	LOC_Os07g03590
Os.51641.1.S1_at--595--701	1	Chr07:1436394..1436418 (25 bp)	GTACATCATGATGCAAGCGTATTGA	LOC_Os07g03590
Os.51641.1.S1_at--208--517	1	Chr07:1436406..1436430 (25 bp)	GCAAGCGTATTGAGTATATCTATAC	LOC_Os07g03590

Target Sequence

TAACGTATTACGTATATGCTATGGTATATATATTTTGCTACTATACTTATATATTGTTTGTACGTAATCGATCTATAGAT
ATATATGCGCATATATGTGCGAACTATATTATATATGTATGTTCGTATGTATGTATGCATATCTGCATGCGTATATAAGT
GTGTGTCGGATGGAATAAGTACATCATGATGCAAGCGTATTGAGTATATCTATAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis