Browse Element(s) Details


Os.50993.1.S1_at

Description gb:AK060005.1
DB_XREF= gi:32970023
TID=Os.50993.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B02, full insert sequence.
FL= gb:AK104140.1 gb:AK060005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0328811/11Basic form of pathogenesis-related protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03260OsAffx.30957.1.S1_s_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.28245.1.S1_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.30957.1.S1_x_at1/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03270Os.47860.1.S1_at11/117+1312066..1314743DnaJ domain containing protein, expressed
LOC_Os07g03279Os.11164.1.S1_at11/117+1317333..1318097SCP-like extracellular protein, expressed
LOC_Os07g03288Os.50993.1.S1_at11/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03288Os.51641.1.S1_x_at5/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03297OsAffx.22759.1.S1_at4/117+1324474..1325997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03310OsAffx.26144.3.S1_s_at11/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.1.S1_x_at6/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.3.S1_at5/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03319OsAffx.16067.1.S1_at2/117+1333665..1334266SCP-like extracellular protein, expressed
LOC_Os07g03328OsAffx.28247.1.S1_x_at11/117+1334496..1334942hypothetical protein
LOC_Os07g03337Os.46306.1.S1_x_at8/117+1336276..1339101transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03350Os.43567.1.S1_x_at6/117+1341718..1346276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03350Os.29987.1.S1_at4/117+1341718..1346276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03350Os.38172.1.S1_x_at3/117+1341718..1346276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03350Os.53217.1.S1_x_at1/117+1341718..1346276transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50993.1.S1_at--797--6993Chr07:1387078..1387102 (25 bp)
GTACGTAACGTATATGCTATGGAAT
NONE
Os.50993.1.S1_at--291--2013Chr07:1387043..1387067 (25 bp)
ACTACTCTAGTATATATTGTACGTA
NONE
Os.50993.1.S1_at--906--6993Chr07:1387025..1387049 (25 bp)
GTACGTATAAATCTTTCTGCTCTCA
NONE
Os.50993.1.S1_at--505--10313Chr07:1387012..1387036 (25 bp)
TTTCTGCTCTCAGTAGATATATATG
NONE
Os.50993.1.S1_at--542--9153Chr07:1386989..1387013 (25 bp)
TGCGCATATATGTACGAACTACTAT
NONE
Os.50993.1.S1_at--996--10113Chr07:1386947..1386971 (25 bp)
TATGTACGCACATCGATCTGCATGC
NONE
Os.50993.1.S1_at--1057--513Chr07:1386936..1386960 (25 bp)
ATCGATCTGCATGCGTATGCATGAT
NONE
Os.50993.1.S1_at--217--4653Chr07:1386924..1386948 (25 bp)
GCGTATGCATGATCAGTGTGTTGGA
NONE
Os.50993.1.S1_at--616--7413Chr07:1386907..1386931 (25 bp)
GTGTTGGATGCAATAAGTACGTCAT
NONE
Os.50993.1.S1_at--231--6333Chr07:1386882..1386906 (25 bp)
GATGCAGACGTATTGAGTATCTACA
NONE
Os.50993.1.S1_at--182--754Chr07:1436443..1436467 (25 bp)
ATGTATCCGGTGTGTATTTTTATTA
NONE
Target Sequence 
GTACGTAACGTATATGCTATGGAATATATTTTGCTACTACTCTAGTATATATTGTACGTATAAATCTTTCTGCTCTCAGT
AGATATATATGCGCATATATGTACGAACTACTATGTATGTTCGTATGTATATATGTACGCACATCGATCTGCATGCGTAT
GCATGATCAGTGTGTTGGATGCAATAAGTACGTCATGATGCAGACGTATTGAGTATCTACAAATACAGATATATATGTAT
CCGGTGTGTATTTTTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis