Browse Element(s) Details


OsAffx.28245.1.S1_at

Description tigr:9635.m00240
TID=OsAffx.28245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0326011/11glycosyl transferase family 2 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03260OsAffx.30957.1.S1_s_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.28245.1.S1_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.30957.1.S1_x_at1/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03270Os.47860.1.S1_at11/117+1312066..1314743DnaJ domain containing protein, expressed
LOC_Os07g03279Os.11164.1.S1_at11/117+1317333..1318097SCP-like extracellular protein, expressed
LOC_Os07g03288Os.50993.1.S1_at11/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03288Os.51641.1.S1_x_at5/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03297OsAffx.22759.1.S1_at4/117+1324474..1325997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03310OsAffx.26144.3.S1_s_at11/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.1.S1_x_at6/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.3.S1_at5/117+1327207..1332928transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28245.1.S1_at--429--8851Chr07:1304063..1304087 (25 bp)
TGATGTCCTTCCTTAACATTCTTCC
LOC_Os07g03260
OsAffx.28245.1.S1_at--921--4391Chr07:1304035..1304059 (25 bp)
GCCAAAATCATTCCCGTTCATCATC
LOC_Os07g03260
OsAffx.28245.1.S1_at--4--7191Chr07:1303984..1304008 (25 bp)
GTCTGTCACCAAGTTCAATGCAATG
LOC_Os07g03260
OsAffx.28245.1.S1_at--902--3191Chr07:1303969..1303993 (25 bp)
CAATGCAATGATCTCCGGGCTGTTC
LOC_Os07g03260
OsAffx.28245.1.S1_at--56--8311Chr07:1303952..1303976 (25 bp)
GGCTGTTCCAGCTCGGAAGCGCATA
LOC_Os07g03260
OsAffx.28245.1.S1_at--186--3551Chr07:1303895..1303919 (25 bp)
CATCGGAGGGTGATCTTATCGCATT
LOC_Os07g03260
OsAffx.28245.1.S1_at--798--10131Chr07:1303879..1303903 (25 bp)
TATCGCATTGGCACCCAAGGAGCTG
LOC_Os07g03260
OsAffx.28245.1.S1_at--849--5351Chr07:1303846..1303870 (25 bp)
GAAGATCCTTGATCTCACAGCAATC
LOC_Os07g03260
OsAffx.28245.1.S1_at--211--4751Chr07:1303807..1303831 (25 bp)
GCTGAAGCAATCCTCTCCAAGAAAT
LOC_Os07g03260
OsAffx.28245.1.S1_at--183--8331Chr07:1303711..1303735 (25 bp)
GGCTCGCAGCTTGCTTTCGAAACAA
LOC_Os07g03260
OsAffx.28245.1.S1_at--11--2191Chr07:1303681..1303705 (25 bp)
ACACTTCTACTTCCTGATGTTTCAG
LOC_Os07g03260
Target Sequence 
TGATGTCCTTCCTTAACATTCTTCCCGCGCCAAAATCATTCCCGTTCATCATCCCGTACCTGCTCTTCGAGAACACCATG
TCTGTCACCAAGTTCAATGCAATGATCTCCGGGCTGTTCCAGCTCGGAAGCGCATATGAATGGGTAGTGACCAAGAAATC
AGGCCGATCATCGGAGGGTGATCTTATCGCATTGGCACCCAAGGAGCTGAAACAACAGAAGATCCTTGATCTCACAGCAA
TCAAGGAGCAGTCCATGCTGAAGCAATCCTCTCCAAGAAATGAGGCCAAGAAGAAATACAACCGGATATACAAGAAGGAG
CTTGCCCTCTCATTGCTTCTCCTGACCGCCGCGGCTCGCAGCTTGCTTTCGAAACAAGGGATACACTTCTACTTCCTGAT
GTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis