Browse Element(s) Details


OsAffx.30957.1.S1_x_at

Description tigr:9639.m01256
TID=OsAffx.30957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1365011/11expressed protein
LOC_Os07g032601/11glycosyl transferase family 2 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13600NANA11+7442044..7448041retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.5.S1_x_at5/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.2.S1_x_at3/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13620Os.54685.1.S1_at11/1111+7455864..7457242expressed protein
LOC_Os11g13620OsAffx.7080.1.S1_x_at1/1111+7455864..7457242expressed protein
LOC_Os11g13630NANA11+7458412..7459506esterase, putative
LOC_Os11g13640Os.38395.3.S1_x_at10/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.4.S1_x_at9/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.2.S1_x_at8/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.1.S1_at1/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13650OsAffx.30957.1.S1_x_at11/1111+7468906..7469658expressed protein
LOC_Os11g13650OsAffx.30957.1.S1_s_at11/1111+7468906..7469658expressed protein
LOC_Os11g13660OsAffx.18831.1.S1_at11/1111+7482245..7482718hypothetical protein
LOC_Os11g13670Os.6335.1.S1_at11/1111+7489407..7490920PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30957.1.S1_x_at--964--4612Chr11:7469579..7469603 (25 bp)
GCGAGACGCCGGTCGTCGTCAAGAT
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--840--7192Chr11:7469565..7469589 (25 bp)
GTCGTCAAGATGGACAATCCCAACT
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--1022--3031Chr11:7469550..7469574 (25 bp)
AATCCCAACTGGTCCATCTGCGAGA
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--811--7791Chr11:7469540..7469564 (25 bp)
GGTCCATCTGCGAGATCGACATCGA
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--299--3551Chr11:7469536..7469560 (25 bp)
CATCTGCGAGATCGACATCGACGCC
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--29--3251Chr11:7469446..7469470 (25 bp)
CAAGCAGATCACCTGGTGCAGCTGC
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--1062--6731Chr11:7469314..7469338 (25 bp)
GTTCATCAGGGCATCGCTCCTGTTG
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--109--1091Chr11:7469307..7469331 (25 bp)
AGGGCATCGCTCCTGTTGTCCGTCT
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--892--9371Chr11:7469214..7469238 (25 bp)
TCGTTCCCTTCCTCGTGGGTGTGCT
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--978--10631Chr11:7469211..7469235 (25 bp)
TTCCCTTCCTCGTGGGTGTGCTTCC
LOC_Os11g13650
OsAffx.30957.1.S1_x_at--976--7191Chr11:7468941..7468962 (22 bp)
GTCGTGGCGCCACGTGTACTAGCTC
LOC_Os11g13650
Target Sequence 
GCGAGACGCCGGTCGTCGTCAAGATGGACAATCCCAACTGGTCCATCTGCGAGATCGACATCGACGCCGACGCCGACGAC
GACGACGGGGAGTTCTTGGCCGGCGGACGACGGCGAGGCAGGGGCAAGAACGCCAAGCAGATCACCTGGTGCAGCTGCTC
AGGCGCACCGCGCCGCGGGGTGCCTCGCCTCCGCCGCCGCGTCGCCGCCGGGCGGACGGATGATGCCGACGCCGAGACAC
CGTCGCCGCGTTCCCGGCTCTACGCGTTCATCAGGGCATCGCTCCTGTTGTCCGTCTTCCTCCTCGCCGTCGAGCTCGCC
GCCAACGCCAACGGCCGTGGCCACGTCCTCGTCGCCTCCGTCGACTCGTTCCCTTCCTCGTGGGTGTGCTTCCGCGCCGC
CTACGTCGCCCCGCCGCTCCAACTCCTCACCGACGCCTACGTCGTGGCGCCACGTGTACTAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30957.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis