Browse Element(s) Details


OsAffx.18831.1.S1_at

Description tigr:9639.m01257
TID=OsAffx.18831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1366011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13630NANA11+7458412..7459506esterase, putative
LOC_Os11g13640Os.38395.3.S1_x_at10/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.4.S1_x_at9/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.2.S1_x_at8/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.1.S1_at1/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13650OsAffx.30957.1.S1_x_at11/1111+7468906..7469658expressed protein
LOC_Os11g13650OsAffx.30957.1.S1_s_at11/1111+7468906..7469658expressed protein
LOC_Os11g13660OsAffx.18831.1.S1_at11/1111+7482245..7482718hypothetical protein
LOC_Os11g13670Os.6335.1.S1_at11/1111+7489407..7490920PrMC3, putative, expressed
LOC_Os11g13680NANA11+7497889..7498949expressed protein
LOC_Os11g13694Os.20184.1.S1_at11/1111+7507346..7523741expressed protein
LOC_Os11g13694OsAffx.18832.1.S1_at10/1111+7507346..7523741expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18831.1.S1_at--854--7511Chr11:7482249..7482273 (25 bp)
GTGGATCAGTCACTAGCGACCGCGA
LOC_Os11g13660
OsAffx.18831.1.S1_at--1014--7371Chr11:7482294..7482318 (25 bp)
GTGACCTTGTGGCATCTAGATCCAT
LOC_Os11g13660
OsAffx.18831.1.S1_at--281--1851Chr11:7482324..7482348 (25 bp)
ACGACTGCGAGACTGGTGGATCCAT
LOC_Os11g13660
OsAffx.18831.1.S1_at--129--3912Chr11:7482336..7482360 (25 bp)
CTGGTGGATCCATCGACGACGGTGA
LOC_Os11g13660
OsAffx.18831.1.S1_at--848--8391Chr11:7482410..7482434 (25 bp)
GGCGCGTTGACAGCTGCGGTAACAA
LOC_Os11g13660
OsAffx.18831.1.S1_at--888--4771Chr11:7482422..7482446 (25 bp)
GCTGCGGTAACAACGATGCTGGACT
LOC_Os11g13660
OsAffx.18831.1.S1_at--157--9931Chr11:7482446..7482470 (25 bp)
TACGGTGACCACGACGACAATCATG
LOC_Os11g13660
OsAffx.18831.1.S1_at--392--6631Chr11:7482481..7482505 (25 bp)
GTTGGGTGGATCTATTGCCTGTGAC
LOC_Os11g13660
OsAffx.18831.1.S1_at--944--3431Chr11:7482547..7482571 (25 bp)
CAGATCTGTCCCCAATGACAACGGG
LOC_Os11g13660
OsAffx.18831.1.S1_at--885--7951Chr11:7482578..7482602 (25 bp)
GGATCTATCGACTACAACTACAATT
LOC_Os11g13660
OsAffx.18831.1.S1_at--266--4471Chr11:7482632..7482656 (25 bp)
GCCGGACTTGGGTGCTACAGATTTA
LOC_Os11g13660
Target Sequence 
GTGGATCAGTCACTAGCGACCGCGAGGCTGGCGGATCCACCGCCAGTGACCTTGTGGCATCTAGATCCATCCCCGACGAC
TGCGAGACTGGTGGATCCATCGACGACGGTGACGGTGGATCCGGCAGCGCTGGACTCGGGAGTGGTGGATCTGTCGCCAT
CGGCGCGTTGACAGCTGCGGTAACAACGATGCTGGACTACGGTGACCACGACGACAATCATGGCTTGGGCAGGTTGGGTG
GATCTATTGCCTGTGACCGTGGGGCGGGCGGATCCACCACTAGCGACCTTGCGGCGTCCAGATCTGTCCCCAATGACAAC
GGGACGGATGGATCTATCGACTACAACTACAATTACGGTGATGACGACGGTGTATCGGGCGGTGCCGGACTTGGGTGCTA
CAGATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis