Browse Element(s) Details


Os.6335.1.S1_at

Description gb:AK061589.1
DB_XREF= gi:32971607
TID=Os.6335.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.6335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G12, full insert sequence.
FL= gb:AK061589.1 gb:AK120858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1367011/11PrMC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13640Os.38395.3.S1_x_at10/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.4.S1_x_at9/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.2.S1_x_at8/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.1.S1_at1/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13650OsAffx.30957.1.S1_x_at11/1111+7468906..7469658expressed protein
LOC_Os11g13650OsAffx.30957.1.S1_s_at11/1111+7468906..7469658expressed protein
LOC_Os11g13660OsAffx.18831.1.S1_at11/1111+7482245..7482718hypothetical protein
LOC_Os11g13670Os.6335.1.S1_at11/1111+7489407..7490920PrMC3, putative, expressed
LOC_Os11g13680NANA11+7497889..7498949expressed protein
LOC_Os11g13694Os.20184.1.S1_at11/1111+7507346..7523741expressed protein
LOC_Os11g13694OsAffx.18832.1.S1_at10/1111+7507346..7523741expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6335.1.S1_at--503--4611Chr11:7489819..7489843 (25 bp)
GCGACCTCATGCTCCGGATCAAGGA
LOC_Os11g13670
Os.6335.1.S1_at--711--1491Chr11:7489771..7489795 (25 bp)
AGCACTGACTGGTCGGCGTCGCAGT
LOC_Os11g13670
Os.6335.1.S1_at--526--1851Chr11:7489744..7489768 (25 bp)
ACGACACGAGCACGAGCAGTACTGT
LOC_Os11g13670
Os.6335.1.S1_at--894--1911Chr11:7489655..7489679 (25 bp)
ACGTGGACTGATTAGGCGAGATGCC
LOC_Os11g13670
Os.6335.1.S1_at--991--8371Chr11:7489641..7489665 (25 bp)
GGCGAGATGCCACGTATTGTAGCTA
LOC_Os11g13670
Os.6335.1.S1_at--335--51Chr11:7489626..7489650 (25 bp)
ATTGTAGCTATCACTAGGCACTAGT
LOC_Os11g13670
Os.6335.1.S1_at--680--931Chr11:7489611..7489635 (25 bp)
AGGCACTAGTGAGCTTATCCAGTAG
LOC_Os11g13670
Os.6335.1.S1_at--964--671Chr11:7489582..7489606 (25 bp)
ATGACACGTGGGACTTGTGTTGGTC
LOC_Os11g13670
Os.6335.1.S1_at--734--7791Chr11:7489561..7489585 (25 bp)
GGTCGCATATGTTATACTGCATGGT
LOC_Os11g13670
Os.6335.1.S1_at--239--3511Chr11:7489542..7489566 (25 bp)
CATGGTGTAGGATGAGGTCGTCAAT
LOC_Os11g13670
Os.6335.1.S1_at--46--6212Chr05:5722559..5722623 (24 bp)
GAGGCCACCAATAAAATGGGATTTA
NONE
Target Sequence 
GCGACCTCATGCTCCGGATCAAGGACATCGTCGCCGGCGGCGGCGGCGAGCACTGACTGGTCGGCGTCGCAGTGCACGAC
ACGAGCACGAGCAGTACTGTGGTTGGTTGGTGGTGGTGAGTGAGTGATTGGGGTGGGGTTGCGTGATGGGGGTGGTGAGT
GATGACGTGGACTGATTAGGCGAGATGCCACGTATTGTAGCTATCACTAGGCACTAGTGAGCTTATCCAGTAGTAAGATG
ACACGTGGGACTTGTGTTGGTCGCATATGTTATACTGCATGGTGTAGGATGAGGTCGTCAATAATTTGTTAGGAGTAAAA
AGTAGAGGCCACCAATAAAATGGGATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis