Browse Element(s) Details


OsAffx.18832.1.S1_at

Description tigr:9639.m01260
TID=OsAffx.18832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1369410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13660OsAffx.18831.1.S1_at11/1111+7482245..7482718hypothetical protein
LOC_Os11g13670Os.6335.1.S1_at11/1111+7489407..7490920PrMC3, putative, expressed
LOC_Os11g13680NANA11+7497889..7498949expressed protein
LOC_Os11g13694Os.20184.1.S1_at11/1111+7507346..7523741expressed protein
LOC_Os11g13694OsAffx.18832.1.S1_at10/1111+7507346..7523741expressed protein
LOC_Os11g13710NANA11+7539381..7540430hypothetical protein
LOC_Os11g13720Os.57334.1.S1_at11/1111+7547441..7548132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18832.1.S1_at--1064--6431Chr11:7513097..7513121 (25 bp)
GATAATTTGGTCACTTGTTTACTTC
LOC_Os11g13694
OsAffx.18832.1.S1_at--154--7711Chr11:7515304..7515328 (25 bp)
GGGTCCCATTAGAGCACGACCATCA
LOC_Os11g13694
OsAffx.18832.1.S1_at--251--3351Chr11:7515327..7515351 (25 bp)
CACGCTCAAGAGCAAAGTCATGGGA
LOC_Os11g13694
OsAffx.18832.1.S1_at--476--8131Chr11:7515383..7515407 (25 bp)
GGACATTGCAACGATCTTTTGCTGC
LOC_Os11g13694
OsAffx.18832.1.S1_at--1107--2571Chr11:7515392..7515416 (25 bp)
AACGATCTTTTGCTGCTCGAGTGCC
LOC_Os11g13694
OsAffx.18832.1.S1_at--406--4071Chr11:7515409..7515433 (25 bp)
CGAGTGCCTCGCTTGTGCGATTGGA
LOC_Os11g13694
OsAffx.18832.1.S1_at--706--7671NONE
GGGATTGTGCGCGTCAAGAAATCTA
NONE
OsAffx.18832.1.S1_at--832--10171Chr11:7516320..7516344 (25 bp)
TATAGATCCGCCAATTAAGCCGTTC
LOC_Os11g13694
OsAffx.18832.1.S1_at--170--3131Chr11:7516332..7516356 (25 bp)
AATTAAGCCGTTCTCTCGGTACTCT
LOC_Os11g13694
OsAffx.18832.1.S1_at--609--9491Chr11:7516345..7516369 (25 bp)
TCTCGGTACTCTGGCAAGACCTACT
LOC_Os11g13694
OsAffx.18832.1.S1_at--400--8511Chr11:7516356..7516380 (25 bp)
TGGCAAGACCTACTTCAGGCGAAGA
LOC_Os11g13694
Target Sequence 
GATAATTTGGTCACTTGTTTACTTCAACAAACATCACTTGATGGAATTGGTCCTCAGTGGATACGGCCTCCTCCTCCAAG
ACTTGAAATACTTGATGGAGAGGTATCTGGGGTCCCATTAGAGCACGACCATCACGCTCAAGAGCAAAGTCATGGGAAGG
TTATTGGGTGGAGTTGCCAAGAAGAAAAGGACATTGCAACGATCTTTTGCTGCTCGAGTGCCTCGCTTGTGCGATTGGAG
GGCAGATGTGTAAAGGGGATTGTGCGCGTCAAGAAATCTATAGATCCGCCAATTAAGCCGTTCTCTCGGTACTCTGGCAA
GACCTACTTCAGGCGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis