Browse Element(s) Details


Os.57334.1.S1_at

Description gb:AK111322.1
DB_XREF= gi:32996531
TID=Os.57334.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D06, full insert sequence.
FL= gb:AK111322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1372011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13694Os.20184.1.S1_at11/1111+7507346..7523741expressed protein
LOC_Os11g13694OsAffx.18832.1.S1_at10/1111+7507346..7523741expressed protein
LOC_Os11g13710NANA11+7539381..7540430hypothetical protein
LOC_Os11g13720Os.57334.1.S1_at11/1111+7547441..7548132expressed protein
LOC_Os11g13730Os.47463.1.S1_x_at5/1111+7550033..7554885transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13730Os.14491.2.S1_x_at4/1111+7550033..7554885transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.27037.1.A1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.34537.1.S1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13750Os.52619.1.S1_at11/1111+7563442..7564248expressed protein
LOC_Os11g13760OsAffx.18833.1.S1_at11/1111+7568708..7568908hypothetical protein
LOC_Os11g13770OsAffx.30959.1.S1_at11/1111+7571321..7571875hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57334.1.S1_at--127--4671Chr11:7547918..7547942 (25 bp)
GCGTGGAGTCGTACGTGCTCCGCCC
LOC_Os11g13720
Os.57334.1.S1_at--119--8191Chr11:7547770..7547794 (25 bp)
GGAAGGCTCGATCCGGTCGCTGGAG
LOC_Os11g13720
Os.57334.1.S1_at--191--1911Chr11:7547573..7547597 (25 bp)
ACGTGATCGCCGCTTCTTGATCGAA
LOC_Os11g13720
Os.57334.1.S1_at--648--4131Chr11:7547563..7547587 (25 bp)
CGCTTCTTGATCGAACGTGTTCTTG
LOC_Os11g13720
Os.57334.1.S1_at--1101--5451Chr11:7547551..7547575 (25 bp)
GAACGTGTTCTTGGCGTTCCTCGAC
LOC_Os11g13720
Os.57334.1.S1_at--1050--6691Chr11:7547536..7547560 (25 bp)
GTTCCTCGACGTGTGCTCAGCTGAT
LOC_Os11g13720
Os.57334.1.S1_at--712--7311Chr11:7547524..7547548 (25 bp)
GTGCTCAGCTGATGCAAGCTCGAAT
LOC_Os11g13720
Os.57334.1.S1_at--870--2691Chr11:7547509..7547533 (25 bp)
AAGCTCGAATGCTTCATGCCACTGA
LOC_Os11g13720
Os.57334.1.S1_at--211--4911Chr11:7547499..7547523 (25 bp)
GCTTCATGCCACTGAGAATCTGTAC
LOC_Os11g13720
Os.57334.1.S1_at--891--1471Chr11:7547485..7547509 (25 bp)
AGAATCTGTACAAATTATGTGCTCT
LOC_Os11g13720
Os.57334.1.S1_at--1089--7311Chr11:7547467..7547491 (25 bp)
GTGCTCTTTGATCCATTAATAATAC
LOC_Os11g13720
Target Sequence 
GCGTGGAGTCGTACGTGCTCCGCCCCGACGGCTCCTTCGAGGTGCGCCTCTCCGGCGACGGCAACGGCGGCGGAGACTGC
GAGTTCCGCGTGGGCGACGGCGGCGCGTACCTGCTCCGGTACGGGCGGCGCGTGGCCGGGGTGGCGATGGAAGGCTCGAT
CCGGTCGCTGGAGGGGGTGAGCGTGAAGGTGCTGTTCGCGTGGCTCGGCATCGGCCGCGTCGACCGCGCCGGCGACGACC
TCCGGTTCTTCGTCGGCCCTCTCTCCGCCGCCTTCCCGCTCGCCAACTTCGCCGACTGCCCGCGCTGCCGCTGCGGCTTC
GACTGCGACACCGCCGCCGCCGCCGACGTGATCGCCGCTTCTTGATCGAACGTGTTCTTGGCGTTCCTCGACGTGTGCTC
AGCTGATGCAAGCTCGAATGCTTCATGCCACTGAGAATCTGTACAAATTATGTGCTCTTTGATCCATTAATAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis