Browse Element(s) Details


OsAffx.18833.1.S1_at

Description tigr:9639.m01267
TID=OsAffx.18833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1376011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13720Os.57334.1.S1_at11/1111+7547441..7548132expressed protein
LOC_Os11g13730Os.47463.1.S1_x_at5/1111+7550033..7554885transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13730Os.14491.2.S1_x_at4/1111+7550033..7554885transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.27037.1.A1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.34537.1.S1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13750Os.52619.1.S1_at11/1111+7563442..7564248expressed protein
LOC_Os11g13760OsAffx.18833.1.S1_at11/1111+7568708..7568908hypothetical protein
LOC_Os11g13770OsAffx.30959.1.S1_at11/1111+7571321..7571875hypothetical protein
LOC_Os11g13780NANA11+7573374..7574932retrotransposon protein, putative, unclassified
LOC_Os11g13790NANA11+7575645..7577337retrotransposon protein, putative, unclassified
LOC_Os11g13800Os.19345.1.S1_at11/1111+7579887..7583823expressed protein
LOC_Os11g13800Os.51061.1.S1_at1/1111+7579887..7583823expressed protein
LOC_Os11g13810Os.10371.1.S1_at11/1111+7590762..7602318expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18833.1.S1_at--590--9251Chr11:7568847..7568871 (25 bp)
TCCTCCTCGTCGTGTGGGAAATTTG
LOC_Os11g13760
OsAffx.18833.1.S1_at--614--931Chr11:7568820..7568844 (25 bp)
AGGAAAGGAACCAGCGGATCTTCGA
LOC_Os11g13760
OsAffx.18833.1.S1_at--409--2932Chr12:20740517..20740541 (25 bp)
AAGGAACCAGCGGATCTTCGAGCAC
NONE
OsAffx.18833.1.S1_at--252--2632Chr12:20740521..20740545 (25 bp)
AACCAGCGGATCTTCGAGCACAAGG
NONE
OsAffx.18833.1.S1_at--1114--4672Chr12:20740526..20740550 (25 bp)
GCGGATCTTCGAGCACAAGGAGTCC
NONE
OsAffx.18833.1.S1_at--675--3191Chr11:7568792..7568816 (25 bp)
CAAGGAGTCCACAACTACATACCCG
LOC_Os11g13760
OsAffx.18833.1.S1_at--729--3291Chr11:7568783..7568807 (25 bp)
CACAACTACATACCCGCTTGCTAAA
LOC_Os11g13760
OsAffx.18833.1.S1_at--1111--291Chr11:7568774..7568798 (25 bp)
ATACCCGCTTGCTAAAATCAAAGAA
LOC_Os11g13760
OsAffx.18833.1.S1_at--1162--2731Chr11:7568754..7568778 (25 bp)
AAGAAGAGGCTAGGCTTTGGATGCT
LOC_Os11g13760
OsAffx.18833.1.S1_at--113--8311Chr11:7568742..7568766 (25 bp)
GGCTTTGGATGCTAGTCGGCGCTAA
LOC_Os11g13760
OsAffx.18833.1.S1_at--433--10231Chr11:7568739..7568763 (25 bp)
TTTGGATGCTAGTCGGCGCTAAGAG
LOC_Os11g13760
Target Sequence 
TCCTCCTCGTCGTGTGGGAAATTTGGAAGGAAAGGAACCAGCGGATCTTCGAGCACAAGGAGTCCACAACTACATACCCG
CTTGCTAAAATCAAAGAAGAGGCTAGGCTTTGGATGCTAGTCGGCGCTAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis