Browse Element(s) Details


Os.19345.1.S1_at

Description gb:AK066870.1
DB_XREF= gi:32976888
TID=Os.19345.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.19345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075N21, full insert sequence.
FL= gb:AK066870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1380011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13740Os.27037.1.A1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.34537.1.S1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13750Os.52619.1.S1_at11/1111+7563442..7564248expressed protein
LOC_Os11g13760OsAffx.18833.1.S1_at11/1111+7568708..7568908hypothetical protein
LOC_Os11g13770OsAffx.30959.1.S1_at11/1111+7571321..7571875hypothetical protein
LOC_Os11g13780NANA11+7573374..7574932retrotransposon protein, putative, unclassified
LOC_Os11g13790NANA11+7575645..7577337retrotransposon protein, putative, unclassified
LOC_Os11g13800Os.19345.1.S1_at11/1111+7579887..7583823expressed protein
LOC_Os11g13800Os.51061.1.S1_at1/1111+7579887..7583823expressed protein
LOC_Os11g13810Os.10371.1.S1_at11/1111+7590762..7602318expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19345.1.S1_at--800--5311Chr11:7580387..7580411 (25 bp)
GAAGGGCATATATCGCGGTACAGTA
LOC_Os11g13800
Os.19345.1.S1_at--39--7851Chr11:7580371..7580395 (25 bp)
GGTACAGTATCAAAGCCACGCAGGG
LOC_Os11g13800
Os.19345.1.S1_at--451--8211Chr11:7580299..7580323 (25 bp)
GGAATGAGATCCTTGCAGCCCAGTT
LOC_Os11g13800
Os.19345.1.S1_at--317--5071Chr11:7580285..7580309 (25 bp)
GCAGCCCAGTTGTAGCTAAGTCTCT
LOC_Os11g13800
Os.19345.1.S1_at--961--8591Chr11:7580240..7580264 (25 bp)
TGGTCAGAACCAACTTAGCTTGAGT
LOC_Os11g13800
Os.19345.1.S1_at--812--311Chr11:7580209..7580233 (25 bp)
ATACGGCGATTGCTAGTCTTCACAA
LOC_Os11g13800
Os.19345.1.S1_at--1052--8171Chr11:7580131..7580155 (25 bp)
GGAAGCTTTCGTTCCTGTAGCTAAT
LOC_Os11g13800
Os.19345.1.S1_at--896--6872Chr11:7580076..7580100 (25 bp)
GTATTTTCTTACTGTGTATGGCCAT
LOC_Os11g13800
Os.19345.1.S1_at--488--2511Chr11:7579979..7580003 (25 bp)
AACATTCTGCGATGAGCACTCATGT
LOC_Os11g13800
Os.19345.1.S1_at--651--5111Chr11:7579964..7579988 (25 bp)
GCACTCATGTTTTGTTTCTCTAGCA
LOC_Os11g13800
Os.19345.1.S1_at--446--331Chr11:7579928..7579952 (25 bp)
ATACACTAGGTGATACCTCGCACTT
LOC_Os11g13800
Target Sequence 
GAAGGGCATATATCGCGGTACAGTATCAAAGCCACGCAGGGAGTTCAAGATTGCTTGCACTGGTGCCTTCCTGGACTACC
AGATACATGGAATGAGATCCTTGCAGCCCAGTTGTAGCTAAGTCTCTAGTTGAATGAGAAGAGCTAATGGTCAGAACCAA
CTTAGCTTGAGTTGTTATATACGGCGATTGCTAGTCTTCACAACAGAGCTTTTGTGCTGCTGCGAGAGGAACAGCAAAGC
AGCAGTGGATTCTTTAGGAAGCTTTCGTTCCTGTAGCTAATGAGCTTCTTGTAATGTAGTAACCACCTTTTGTATTTTCT
TACTGTGTATGGCCATTGAATTGATTGGCAGTAACGGAGTAGTCTTATAGATAAGTTATTTACGCTCTTGGAAATGCGTT
TTGTGATTAACATTCTGCGATGAGCACTCATGTTTTGTTTCTCTAGCAGTATTATACTAATACACTAGGTGATACCTCGC
ACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis