Browse Element(s) Details


Os.34537.1.S1_at

Description gb:AK070988.1
DB_XREF= gi:32981011
TID=Os.34537.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0480C01.26 (P0480C01.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077M05, full insert sequence.
FL= gb:AK070988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5216011/11copper-binding family protein, putative, expressed
LOC_Os11g137401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34537.1.S1_at--476--5891Chr01:30332473..30332497 (25 bp)
GAGCGTCTCCAAGGTGATGAAGTTT
LOC_Os01g52160
Os.34537.1.S1_at--596--2511Chr01:30332519..30332543 (25 bp)
AACTCCCAAGGTTGCTAGCTAAGCT
LOC_Os01g52160
Os.34537.1.S1_at--183--271Chr01:30332579..30332603 (25 bp)
ATATGTGAGATCTCGTCGCGTCAAG
LOC_Os01g52160
Os.34537.1.S1_at--494--6871Chr01:30332603..30332627 (25 bp)
GTATTCAAGTGTATGGTACGCCATG
LOC_Os01g52160
Os.34537.1.S1_at--157--10551Chr01:30332638..30332662 (25 bp)
TTCTCGTCCGTCTCGGTCTTGAACG
LOC_Os01g52160
Os.34537.1.S1_at--1046--7151Chr01:30332647..30332671 (25 bp)
GTCTCGGTCTTGAACGCATCGCGTG
LOC_Os01g52160
Os.34537.1.S1_at--422--5451Chr01:30332658..30332682 (25 bp)
GAACGCATCGCGTGCACATATACAG
LOC_Os01g52160
Os.34537.1.S1_at--1092--5111Chr01:30332671..30332695 (25 bp)
GCACATATACAGAAGCACCGTCAGG
LOC_Os01g52160
Os.34537.1.S1_at--173--2731Chr01:30332683..30332707 (25 bp)
AAGCACCGTCAGGATTGATCAGGAA
LOC_Os01g52160
Os.34537.1.S1_at--1022--4552Chr01:30332725..30332749 (25 bp)
GCGCCATTTTCAGTGCATGTGTTTT
LOC_Os01g52160
Os.34537.1.S1_at--433--1131Chr01:30332736..30332760 (25 bp)
AGTGCATGTGTTTTCCCTGCATCGG
LOC_Os01g52160
Target Sequence 
GAGCGTCTCCAAGGTGATGAAGTTTGCAGAGCTGTGGGTGGCCCCCAACTCCCAAGGTTGCTAGCTAAGCTAGTAGTAGA
ATGATAGATCGGCGGGGATAATACATATATGTGAGATCTCGTCGCGTCAAGTATTCAAGTGTATGGTACGCCATGGGGTC
GTGCCTTCTCGTCCGTCTCGGTCTTGAACGCATCGCGTGCACATATACAGAAGCACCGTCAGGATTGATCAGGAAATGTA
NCTAGGGAAGANGCGCCATTTTCAGTGCATGTGTTTTCCCTGCATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis