Browse Element(s) Details


Os.34537.2.S1_x_at

Description gb:NM_191793.1
DB_XREF= gi:34910669
GEN=P0480C01.26
TID=Os.34537.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0480C01.26 (P0480C01.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0480C01.26 (P0480C01.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g521607/11copper-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34537.2.S1_x_at--471--3831Chr01:30330679..30330703 (25 bp)
CTGCGTCTGCATACATTCGGTGGAA
LOC_Os01g52160
Os.34537.2.S1_x_at--1002--7351Chr01:30330764..30330788 (25 bp)
GTGAAGCTCAAGGATCTCGTCGGCG
LOC_Os01g52160
Os.34537.2.S1_x_at--602--3791Chr01:30330800..30330823 (24 bp)
CTCGCTTTCCATCTAGAGCCAAAGA
LOC_Os01g52160
Os.34537.2.S1_x_at--291--1691Chr01:30330546..30330952 (25 bp)
AGCCAAAGACCGTGGAGCTCAGGGT
LOC_Os01g52160
Os.34537.2.S1_x_at--447--5091Chr01:30330959..30330983 (25 bp)
GCACTGCTACGGATGCGCCAAGAAA
LOC_Os01g52160
Os.34537.2.S1_x_at--63--251Chr01:30332448..30332472 (25 bp)
ATATCACGCCGTATGAGGTGCTGGC
LOC_Os01g52160
Os.34537.2.S1_x_at--614--9131Chr01:30332466..30332486 (21 bp)
TGCTGGCGAGCGTCTCCAAGGCAAA
LOC_Os01g52160
Os.34537.2.S1_x_at--583--931Chr01:30333986..30334010 (25 bp)
AGGCAAACTCACAATGCACTGTCTC
NONE
Os.34537.2.S1_x_at--810--7411Chr01:30334033..30334057 (25 bp)
GTGTTGCCACAAACCACTGGAGCCC
NONE
Os.34537.2.S1_x_at--405--9171Chr01:30334063..30334087 (25 bp)
TGCCGACCTCCTACTGCCATTGTTG
NONE
Os.34537.2.S1_x_at--584--51Chr01:30334081..30334105 (25 bp)
ATTGTTGCCTTCGTGATCATCTCGC
NONE
Target Sequence 
CTGCGTCTGCATACATTCGGTGGAAGACGACGAGGAGGAGGCCATCGAGAGGGAGGCGCTGGTGAGCTCTCAGCTGGAAG
AGCTTGTGAAGCTCAAGGATCTCGTCGGCGGAGCCAAGACTCTCGCTTTCCATCTAGAGCCAAAGACCGTGGAGCTCAGG
GTGTCCATGCACTGCTACGGATGCGCCAAGAAAGTTCAGAAGCATATATCCAAGATGGACGGTGTTACGTCGTTTGAGGT
AGATCTAGAGAGTAAGAAGGTGGTGGTGATAGGGGATATCACGCCGTATGAGGTGCTGGCGAGCGTCTCCAAGGCAAACT
CACAATGCACTGTCTCCCTTGCCTCCCTCCTCTTTCCCGTGTTGCCACAAACCACTGGAGCCCCTCTTTGCCGACCTCCT
ACTGCCATTGTTGCCTTCGTGATCATCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34537.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis