Browse Element(s) Details


OsAffx.11571.1.S1_at

Description tigr:9629.m05058
TID=OsAffx.11571.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5215011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11571.1.S1_at--405--3391Chr01:30328168..30328192 (25 bp)
CAGCGCATCGATATCAGAGTCCATG
LOC_Os01g52150
OsAffx.11571.1.S1_at--134--4971Chr01:30328164..30328188 (25 bp)
GCATCGATATCAGAGTCCATGTCCA
LOC_Os01g52150
OsAffx.11571.1.S1_at--324--5791Chr01:30327749..30327773 (25 bp)
GACGACGACGTGAACATGTTCGGAG
LOC_Os01g52150
OsAffx.11571.1.S1_at--483--3271Chr01:30327717..30327741 (25 bp)
CAACAGTGGACGGATCACGGATGTA
LOC_Os01g52150
OsAffx.11571.1.S1_at--293--1931Chr01:30327708..30327732 (25 bp)
ACGGATCACGGATGTAGGAGCAAGA
LOC_Os01g52150
OsAffx.11571.1.S1_at--397--751Chr01:30327697..30327721 (25 bp)
ATGTAGGAGCAAGAGGGCCTGAAAA
LOC_Os01g52150
OsAffx.11571.1.S1_at--271--71Chr01:30327639..30327663 (25 bp)
ATTGCCCGTTTCGTCCAATCCAGAT
LOC_Os01g52150
OsAffx.11571.1.S1_at--1036--4011Chr01:30327633..30327657 (25 bp)
CGTTTCGTCCAATCCAGATAGTAAT
LOC_Os01g52150
OsAffx.11571.1.S1_at--680--1251Chr01:30327618..30327642 (25 bp)
AGATAGTAATCTCAGCATGGTCCAG
LOC_Os01g52150
OsAffx.11571.1.S1_at--284--1171Chr01:30327614..30327638 (25 bp)
AGTAATCTCAGCATGGTCCAGCCGG
LOC_Os01g52150
OsAffx.11571.1.S1_at--73--9671Chr01:30327607..30327631 (25 bp)
TCAGCATGGTCCAGCCGGATGAACA
LOC_Os01g52150
Target Sequence 
CAGCGCATCGATATCAGAGTCCATGTCCAAGACGACGACGTGAACATGTTCGGAGGGTGGGGCAACAGTGGACGGATCAC
GGATGTAGGAGCAAGAGGGCCTGAAAAGGGTGAAGCAGGGGCCAGGGGCTTCCTCTCTCCATTGCCCGTTTCGTCCAATC
CAGATAGTAATCTCAGCATGGTCCAGCCGGATGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis