Browse Element(s) Details


Os.35752.3.S1_x_at

Description gb:NM_194156.1
DB_XREF= gi:34915349
TID=Os.35752.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1119_A04.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1119_A04.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0258011/11NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os03g306102/11NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os01g522142/11NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02540OsAffx.16049.1.S1_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.16049.1.S1_x_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.3615.1.S1_s_at1/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02550NANA7+916698..917609hypothetical protein
LOC_Os07g02560OsAffx.21075.2.S1_at11/117+918200..919735NB-ARC domain containing protein
LOC_Os07g02570Os.35752.2.S1_x_at11/117+923605..925137NB-ARC domain containing protein
LOC_Os07g02580Os.35752.3.S1_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02580Os.35752.3.S1_x_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02590Os.18548.1.S1_x_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.34986.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.18548.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02600Os.46785.2.S1_x_at3/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.30226.2.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.442.1.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35752.3.S1_x_at--136--7591Chr07:926582..926606 (25 bp)
GGGCTACTGGTTACGCGACGGCGGC
LOC_Os07g02580
Os.35752.3.S1_x_at--399--8691Chr07:926551..926575 (25 bp)
TGTCGTTCGGGCAGAGTTAGTGATC
LOC_Os07g02580
Os.35752.3.S1_x_at--180--1351Chr07:926539..926563 (25 bp)
AGAGTTAGTGATCTCCAAGGTAGAC
LOC_Os07g02580
Os.35752.3.S1_x_at--359--1872Chr07:926516..926540 (25 bp)
ACGACCTCATGAACTGGGCGCGGAG
LOC_Os07g02580
Os.35752.3.S1_x_at--200--7811Chr07:926489..926513 (25 bp)
GGTCGATCTGGCCTACTGCGCCGTC
LOC_Os07g02580
Os.35752.3.S1_x_at--1072--9373Chr03:17419399..17419423 (25 bp)
TCGAGATGATGCACGCCGGCGCGTC
LOC_Os03g30610
Os.35752.3.S1_x_at--1066--4092Chr03:17419470..17419493 (24 bp)
CGACAGTCCGACTGCATGATCATCG
LOC_Os03g30610
Os.35752.3.S1_x_at--174--4571Chr07:926341..926365 (25 bp)
GCGCTCGGCAAGTCAGTACCATCTT
LOC_Os07g02580
Os.35752.3.S1_x_at--287--9451Chr07:926337..926361 (25 bp)
TCGGCAAGTCAGTACCATCTTCCTC
LOC_Os07g02580
Os.35752.3.S1_x_at--434--9451Chr07:926309..926333 (25 bp)
TCGGCTGCTCAGATTTGGCGTTCCT
LOC_Os07g02580
Os.35752.3.S1_x_at--941--3431Chr07:926300..926324 (25 bp)
CAGATTTGGCGTTCCTGTGCTCCGA
LOC_Os07g02580
Target Sequence 
GGGCTACTGGTTACGCGACGGCGGCGGCGGGTGTCGTTCGGGCAGAGTTAGTGATCTCCAAGGTAGACGACCTCATGAAC
TGGGCGCGGAGGGGGTCGATCTGGCCTACTGCGCCGTCGAGATGATGCACGCCGGCGCGTCCTGCTATGACTTCGACCGC
TTTCGCGTCATCTTCCGCCCATCCCCGCGACAGTCCGACTGCATGATCATCGTCGGGACGCTCACCAACAAGATGGGGCC
CGCGCTCGGCAAGTCAGTACCATCTTCCTCCCCTCGGCTGCTCAGATTTGGCGTTCCTGTGCTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35752.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis