Browse Element(s) Details


OsAffx.21073.1.S1_at

Description tigr:9635.m00168
TID=OsAffx.21073.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0262011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02560OsAffx.21075.2.S1_at11/117+918200..919735NB-ARC domain containing protein
LOC_Os07g02570Os.35752.2.S1_x_at11/117+923605..925137NB-ARC domain containing protein
LOC_Os07g02580Os.35752.3.S1_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02580Os.35752.3.S1_x_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02590Os.18548.1.S1_x_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.34986.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.18548.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02600Os.46785.2.S1_x_at3/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.30226.2.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.442.1.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein
LOC_Os07g02650OsAffx.5186.1.S1_at11/117+956252..957608hypothetical protein
LOC_Os07g02660Os.40473.1.S1_at11/117+958899..961525NB-ARC domain containing protein
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21073.1.S1_at--229--1751Chr07:944076..944100 (25 bp)
ACCTCTTCGCCTAAAATTCTTGTCT
LOC_Os07g02620
OsAffx.21073.1.S1_at--589--6511Chr07:943994..944018 (25 bp)
GATTACCCCGAGGTGGCATCGGTAT
LOC_Os07g02620
OsAffx.21073.1.S1_at--898--851Chr07:943892..943916 (25 bp)
ATGGCTACCTTCATTCAAGCTAGTA
LOC_Os07g02620
OsAffx.21073.1.S1_at--1140--9831Chr07:943865..943889 (25 bp)
TACAATGGCGACTGGCTTAGCCTGC
LOC_Os07g02620
OsAffx.21073.1.S1_at--18--9151Chr07:943843..943867 (25 bp)
TGCGTGAGCGCTTCAGGACCAAGGA
LOC_Os07g02620
OsAffx.21073.1.S1_at--285--5831Chr07:943812..943836 (25 bp)
GAGCCAGTTACTGCCTAACAAAGGT
LOC_Os07g02620
OsAffx.21073.1.S1_at--197--5171Chr07:943765..943789 (25 bp)
GCAAGTGTGTGGTTATTCCTAGGAC
LOC_Os07g02620
OsAffx.21073.1.S1_at--723--2511Chr07:943705..943729 (25 bp)
AACATTGCCGAGTAGAGCTTGCTCA
LOC_Os07g02620
OsAffx.21073.1.S1_at--425--7311Chr07:943598..943622 (25 bp)
GTGCTGTGGAGATCTCATTTGCCGC
LOC_Os07g02620
OsAffx.21073.1.S1_at--1131--9591Chr07:943584..943608 (25 bp)
TCATTTGCCGCCTTATTACAGCTAC
LOC_Os07g02620
OsAffx.21073.1.S1_at--42--311Chr07:943555..943579 (25 bp)
ATAGCTCCGAGATTCATGAGTTCAA
LOC_Os07g02620
Target Sequence 
ACCTCTTCGCCTAAAATTCTTGTCTCGAGAAGCTTACTGGTACTTCTTCAAGGTTCTCGCATTCGGAAGCTCAGATCCTA
AAGATTACCCCGAGGTGGCATCGGTATCAATGGCGATGTTTAATGGATACTTTGATCGTGAGATGTACAATACTTTCATT
GGACCATTCATTGATCTGAACAACATGGCTACCTTCATTCAAGCTAGTATTTACAATGGCGACTGGCTTAGCCTGCGTGA
GCGCTTCAGGACCAAGGAATCAAAGAGCCAGTTACTGCCTAACAAAGGTTCAGGTGATTTTGGGATGAAGAGCAAGTGTG
TGGTTATTCCTAGGACAGATGGAAATGTGAACTACTACTGTGAAATCTTTGAACATTGCCGAGTAGAGCTTGCTCATGCA
GAAGATCAGAAGGCTCCAAAAATTGGTATACAAGATATCTTGTCAGGGAGAGTTGAACCTCATGGGAAATTTGATCTTGT
GCTGTGGAGATCTCATTTGCCGCCTTATTACAGCTACATATATAGCTCCGAGATTCATGAGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis