Browse Element(s) Details


OsAffx.16053.1.S1_x_at

Description gb:NM_194168.1
DB_XREF= gi:34915373
GEN=OJ1119_A04.26
TID=OsAffx.16053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1119_A04.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0267411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein
LOC_Os07g02650OsAffx.5186.1.S1_at11/117+956252..957608hypothetical protein
LOC_Os07g02660Os.40473.1.S1_at11/117+958899..961525NB-ARC domain containing protein
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein
LOC_Os07g02690Os.39706.1.S1_at11/117+971167..971827expressed protein
LOC_Os07g02690Os.23172.1.S1_x_at3/117+971167..971827expressed protein
LOC_Os07g02690Os.46022.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.36607.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.40003.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16053.1.S1_x_at--81--5271Chr07:968595..968619 (25 bp)
GACGAAACCAAGTGCTTGGCGGTCG
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--517--2311Chr07:968557..968581 (25 bp)
AAAGGCAGCCGGATCTGGAGATTCC
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--187--91Chr07:968537..968561 (25 bp)
ATTCCGGCGACAACGGCGGCGCTGT
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--717--8751Chr07:968515..968539 (25 bp)
TGTACGGACGGCGATGCCTCTACAA
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--126--2651Chr07:968492..968516 (25 bp)
AACCATCCCGTCTGACAGACAGGTG
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--305--1051Chr07:968472..968496 (25 bp)
AGGTGAGCCCTGTCTGCTCTTCATT
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--860--9091Chr07:968458..968482 (25 bp)
TGCTCTTCATTCAGGTACTCAATTT
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--941--9731Chr07:968440..968464 (25 bp)
TCAATTTCCAAGGATCTGGCGATCT
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--1067--9451Chr07:968426..968450 (25 bp)
TCTGGCGATCTGTAGCATATTCAGA
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--699--3411Chr07:968405..968429 (25 bp)
CAGAATGTTTTATCTTCCCAGAGAA
LOC_Os07g02674
OsAffx.16053.1.S1_x_at--538--5531Chr07:968383..968407 (25 bp)
GAAAAAGGTGTATTGATCCCAAAAG
LOC_Os07g02674
Target Sequence 
GACGAAACCAAGTGCTTGGCGGTCGGCGGTGGAGCAGCAAAGGCAGCCGGATCTGGAGATTCCGGCGACAACGGCGGCGC
TGTACGGACGGCGATGCCTCTACAACCATCCCGTCTGACAGACAGGTGAGCCCTGTCTGCTCTTCATTCAGGTACTCAAT
TTCCAAGGATCTGGCGATCTGTAGCATATTCAGAATGTTTTATCTTCCCAGAGAAAAAGGTGTATTGATCCCAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16053.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis