Browse Element(s) Details


Os.39706.1.S1_at

Description gb:CF315120
DB_XREF= gi:33686881
DB_XREF=HD--03-O18.g1
CLONE=HD--03-O18
TID=Os.39706.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 7, P0022B05.21 (OJ1119_A04.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0269011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein
LOC_Os07g02650OsAffx.5186.1.S1_at11/117+956252..957608hypothetical protein
LOC_Os07g02660Os.40473.1.S1_at11/117+958899..961525NB-ARC domain containing protein
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein
LOC_Os07g02690Os.39706.1.S1_at11/117+971167..971827expressed protein
LOC_Os07g02690Os.23172.1.S1_x_at3/117+971167..971827expressed protein
LOC_Os07g02690Os.46022.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.36607.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.40003.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39706.1.S1_at--608--2171Chr07:971249..971273 (25 bp)
ACAAATTGAGAACCACCGCTCCGGT
LOC_Os07g02690
Os.39706.1.S1_at--910--1791Chr07:971263..971287 (25 bp)
ACCGCTCCGGTGCTGAGGTCGTCAA
LOC_Os07g02690
Os.39706.1.S1_at--375--3811Chr07:971267..971291 (25 bp)
CTCCGGTGCTGAGGTCGTCAATGGA
LOC_Os07g02690
Os.39706.1.S1_at--19--6011Chr07:971329..971353 (25 bp)
GAGAGCTCGGTCTCCCTAAGGGCCT
LOC_Os07g02690
Os.39706.1.S1_at--585--5351Chr07:971450..971474 (25 bp)
GAAGATCAAGCAGACTGTGTCTTAT
LOC_Os07g02690
Os.39706.1.S1_at--42--2731Chr07:971457..971481 (25 bp)
AAGCAGACTGTGTCTTATGCCCGTG
LOC_Os07g02690
Os.39706.1.S1_at--1125--3411Chr07:971460..971484 (25 bp)
CAGACTGTGTCTTATGCCCGTGAGG
LOC_Os07g02690
Os.39706.1.S1_at--488--1951Chr07:971463..971487 (25 bp)
ACTGTGTCTTATGCCCGTGAGGTCA
LOC_Os07g02690
Os.39706.1.S1_at--1015--8711Chr07:971467..971491 (25 bp)
TGTCTTATGCCCGTGAGGTCACGGC
LOC_Os07g02690
Os.39706.1.S1_at--907--2751Chr07:971610..971634 (25 bp)
AAGACGGGAACTGGGCTCTCTGACA
LOC_Os07g02690
Os.39706.1.S1_at--1079--7591Chr07:971615..971639 (25 bp)
GGGAACTGGGCTCTCTGACACCTTC
LOC_Os07g02690
Target Sequence 
ACAAATTGAGAACCACCGCTCCGGTGCTGAGGTCGTCAATGGAGATGCCATCTGCAGGAAGAGGTCCATTGAGCTGCTGG
GAGAGCTCGGTCTCCCTAAGGGCCTCCTGCCATTGGAGGACATCGAGGAGTTCGGCTACAACCGGGACACTGGATTCATG
TGGCTGGTGCAGAAGAAGAAGAAGATCGAGCACACCTTCAAGAAGATCAAGCAGACTGTGTCTTATGCCCGTGAGGTCAC
GGCGTTCGTCGAGAAGGGGAAGCTGAAGAAGATCACCGGCGTGAAGACCAAGGANCTGNNNCTNCTGGCTCAGCGTCGTC
NGAGGTCTACCTCGCCGATGCCTCGCNGGAGAAGGTCACCTTCAAGACGGGAACTGGGCTCTCTGACACCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis