Browse Element(s) Details


Os.7343.1.S1_at

Description gb:AU222757
DB_XREF= gi:15008369
DB_XREF=AU222757
CLONE=S0722
TID=Os.7343.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.7343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C27019(C50719),AU100787(C50719)~unknown protein (OJ1119_A04.29), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0271011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein
LOC_Os07g02650OsAffx.5186.1.S1_at11/117+956252..957608hypothetical protein
LOC_Os07g02660Os.40473.1.S1_at11/117+958899..961525NB-ARC domain containing protein
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein
LOC_Os07g02690Os.39706.1.S1_at11/117+971167..971827expressed protein
LOC_Os07g02690Os.23172.1.S1_x_at3/117+971167..971827expressed protein
LOC_Os07g02690Os.46022.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.36607.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.40003.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein
LOC_Os07g02740OsAffx.28239.1.S1_at11/117+998418..998753hypothetical protein
LOC_Os07g02750Os.26886.3.S1_x_at5/117+1001966..1003454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02760Os.9730.2.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02760Os.9730.1.S1_at11/117+1005085..1008435F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7343.1.S1_at--1134--4911Chr07:978903..978927 (25 bp)
GCTTGAAGACATTGCCAGCTATCTG
LOC_Os07g02710
Os.7343.1.S1_at--193--1571Chr07:978919..978943 (25 bp)
AGCTATCTGCTTCTTGCATGTGGAC
LOC_Os07g02710
Os.7343.1.S1_at--994--231Chr07:978950..979412 (25 bp)
ATATAATCTCGGGTGTGCTGTGCAT
LOC_Os07g02710
Os.7343.1.S1_at--733--7411Chr07:979417..979441 (25 bp)
GTGTTGAAGCGTTCTAGGCAGCAGA
LOC_Os07g02710
Os.7343.1.S1_at--43--6211Chr07:979828..979852 (25 bp)
GAGGCACTTCTACTTGCTCAGAGGT
LOC_Os07g02710
Os.7343.1.S1_at--519--5971Chr07:979855..979879 (25 bp)
GAGACGGTCTGACGGATTCCAACCA
LOC_Os07g02710
Os.7343.1.S1_at--363--8111Chr07:979880..979904 (25 bp)
GGACGATCTGACATTTACTTGTTCA
LOC_Os07g02710
Os.7343.1.S1_at--656--8771Chr07:979919..979943 (25 bp)
TGTTTGTTTTTGTTCCTGCCGCTTG
LOC_Os07g02710
Os.7343.1.S1_at--726--3691Chr07:979945..979969 (25 bp)
CTATATCTTGTTCGTGGTCACCATC
LOC_Os07g02710
Os.7343.1.S1_at--178--10391Chr07:980025..980049 (25 bp)
TTTTCCAACTCTGAATTGTTCTCCT
LOC_Os07g02710
Os.7343.1.S1_at--1067--3291Chr07:980059..980083 (25 bp)
CACTAAAGTGTAGTTCTTCCCCTCA
LOC_Os07g02710
Target Sequence 
GCTTGAAGACATTGCCAGCTATCTGCTTCTTGCATGTGGACTGATCTATATAATCTCGGGTGTGCTGTGCATTGGTGTGT
TGAAGCGTTCTAGGCAGCAGAAAGCAACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAA
GAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGT
TCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATCTTGTTCGTGGTCACCATCATTTGAAGTAAA
TCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCAC
TAAAGTGTAGTTCTTCCCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis