Browse Element(s) Details


Os.9730.1.S1_at

Description gb:AK099452.1
DB_XREF= gi:32984661
TID=Os.9730.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU086062(S4578)~unknown protein (OJ1119_A04.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022I16, full insert sequence.
FL= gb:AK099452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0276011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein
LOC_Os07g02740OsAffx.28239.1.S1_at11/117+998418..998753hypothetical protein
LOC_Os07g02750Os.26886.3.S1_x_at5/117+1001966..1003454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02760Os.9730.2.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02760Os.9730.1.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02770Os.17878.1.S1_at11/117+1010179..1013284F-box domain containing protein, expressed
LOC_Os07g02780Os.34851.1.S1_at11/117+1013653..1019896protein kinase family protein, putative, expressed
LOC_Os07g02790Os.5591.1.S1_at11/117+1022177..1024721expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9730.1.S1_at--99--5471Chr07:1007806..1007830 (25 bp)
GAACTGGACATGAAATTGCCCTTGT
LOC_Os07g02760
Os.9730.1.S1_at--1026--9151Chr07:1007822..1007846 (25 bp)
TGCCCTTGTGAAGTGGCTATTCAGT
LOC_Os07g02760
Os.9730.1.S1_at--610--2251Chr07:1007876..1007900 (25 bp)
AAATTTCTATCATTCAGTCCCTGAG
LOC_Os07g02760
Os.9730.1.S1_at--253--9651Chr07:1007889..1007913 (25 bp)
TCAGTCCCTGAGAGCACGGCGAAAG
LOC_Os07g02760
Os.9730.1.S1_at--963--5071Chr07:1008021..1008045 (25 bp)
GCACCAGACTTGACGCTTGACTATT
LOC_Os07g02760
Os.9730.1.S1_at--896--7011Chr07:1008070..1008094 (25 bp)
GTACTTGGTTTGAACTGCGTTGCAT
LOC_Os07g02760
Os.9730.1.S1_at--487--9051Chr07:1008130..1008154 (25 bp)
TGCAGGTCAGCCATCTATCTTACAA
LOC_Os07g02760
Os.9730.1.S1_at--553--5871Chr07:1008163..1008187 (25 bp)
GAGCCGTGCAAATTCATGTAGTGTA
LOC_Os07g02760
Os.9730.1.S1_at--990--8271Chr07:1008238..1008262 (25 bp)
GGCATATCTTCCATCACATGAGTGT
LOC_Os07g02760
Os.9730.1.S1_at--294--7331Chr07:1008353..1008377 (25 bp)
GTGCAGGATTTATCTCGTTATCTTT
LOC_Os07g02760
Os.9730.1.S1_at--272--1311Chr07:1008412..1008435 (24 bp)
AGATGGAAGTCACGCTTCCTTGGCG
LOC_Os07g02760
Target Sequence 
GAACTGGACATGAAATTGCCCTTGTGAAGTGGCTATTCAGTTGGGCAGTAGTGTTGAAAGACATGACGATAAATTTCTAT
CATTCAGTCCCTGAGAGCACGGCGAAAGAGATGGCGTAAGGTTTTGTATGTTCCAGAGGACTAATGCGCCGCACCAGACT
TGACGCTTGACTATTAGACTCATTTTGCTTTCTAGTTTTGTACTTGGTTTGAACTGCGTTGCATGTAAACATCAAAATGC
TCTCAGATATTAGACAAAATGCAGGTCAGCCATCTATCTTACAAGAACATGTGAGCCGTGCAAATTCATGTAGTGTAACT
GCTGCACAAAATTGGTTAGAACTTAAAGTTAATGGCTGCAAAACTTTGGCATATCTTCCATCACATGAGTGTTAGAGCAG
GCAGGGCTCATATGTGATGCAGTAATGTTTCATTCCATCATTTAATTTTGAGCAGCTGATAGAAAGTTAGAACATGGAGG
ATGTGCAGGATTTATCTCGTTATCTTTGTATGTTTCAATTGTGTAAGGTACAAGTTAACAGAGATGGAAGTCACGCTTCC
TTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis