Browse Element(s) Details


Os.34851.1.S1_at

Description gb:AK069889.1
DB_XREF= gi:32979913
TID=Os.34851.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MAP3K protein kinase(Mitogen-activated protein kinase) (OJ1119_A04.39), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040N08, full insert sequence.
FL= gb:AK069889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0278011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein
LOC_Os07g02740OsAffx.28239.1.S1_at11/117+998418..998753hypothetical protein
LOC_Os07g02750Os.26886.3.S1_x_at5/117+1001966..1003454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02760Os.9730.2.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02760Os.9730.1.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02770Os.17878.1.S1_at11/117+1010179..1013284F-box domain containing protein, expressed
LOC_Os07g02780Os.34851.1.S1_at11/117+1013653..1019896protein kinase family protein, putative, expressed
LOC_Os07g02790Os.5591.1.S1_at11/117+1022177..1024721expressed protein
LOC_Os07g02800Os.10333.1.S1_at11/117+1044316..1046349myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34851.1.S1_at--179--211Chr07:1014198..1014222 (25 bp)
ATTTCCATCTCGGATCATGTTCATG
LOC_Os07g02780
Os.34851.1.S1_at--993--6431Chr07:1014186..1014210 (25 bp)
GATCATGTTCATGTGCACAACTTTG
LOC_Os07g02780
Os.34851.1.S1_at--1057--2951Chr07:1014161..1014185 (25 bp)
AATGCGAACTCGGTCCTAACTGTAT
LOC_Os07g02780
Os.34851.1.S1_at--444--5251Chr07:1014079..1014103 (25 bp)
GAATCTTGGATGTTGCGCTGTTATA
LOC_Os07g02780
Os.34851.1.S1_at--387--5991Chr07:1014010..1014034 (25 bp)
GAGACATACCTTGCACTAACAATCA
LOC_Os07g02780
Os.34851.1.S1_at--584--9031Chr07:1013962..1013986 (25 bp)
TGCAGCAGCCATCTTTAACTAAGTT
LOC_Os07g02780
Os.34851.1.S1_at--748--6571Chr07:1013872..1013896 (25 bp)
GATTGCCTATTTGGACATGCGACTA
LOC_Os07g02780
Os.34851.1.S1_at--385--2991Chr07:1013847..1013871 (25 bp)
AATGTTGCTGAATGTGACGGATCCA
LOC_Os07g02780
Os.34851.1.S1_at--881--4991Chr07:1013817..1013841 (25 bp)
GCATGGGATCTTCATTGTTTTGGGA
LOC_Os07g02780
Os.34851.1.S1_at--207--7251Chr07:1013731..1013755 (25 bp)
GTCCCTTATTCTAATCTCATCTAAC
LOC_Os07g02780
Os.34851.1.S1_at--784--2491Chr07:1013709..1013733 (25 bp)
AACAGGTTCCACTGCTGTGTAATCA
LOC_Os07g02780
Target Sequence 
ATTTCCATCTCGGATCATGTTCATGTGCACAACTTTGAATGCGAACTCGGTCCTAACTGTATTTATAGAATTAAAGCAGA
GAAAGAATAGGAAGATATAAGAAGGAAGATAAATCTTGTGAATCTTGGATGTTGCGCTGTTATATCAGCTACACAGCAAT
AAGATAAATGGTGGAAGACATCCCAGAAGAGACATACCTTGCACTAACAATCATGTGATGGAAGACATAAAAGTTTTGCA
GCAGCCATCTTTAACTAAGTTAACCATTTTTGTGCAATAGTTGCACTATATGAATTTGTACAGCTTACATGTTCTTGTAA
AATAGTGATTGCCTATTTGGACATGCGACTAAATGTTGCTGAATGTGACGGATCCATGAAAGCATGGGATCTTCATTGTT
TTGGGATATTCTGATGGCATTTTTTTTTTGTAACATACAATCAGGAATAACTGTAGATAAGTTGAAAGTCCCTTATTCTA
ATCTCATCTAACAGGTTCCACTGCTGTGTAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis