Browse Element(s) Details


Os.5591.1.S1_at

Description gb:AU172406
DB_XREF= gi:12622193
DB_XREF=AU172406
CLONE=C63866
TID=Os.5591.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU172406(C63866)~unknown protein (P0022B05.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0279011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02740OsAffx.28239.1.S1_at11/117+998418..998753hypothetical protein
LOC_Os07g02750Os.26886.3.S1_x_at5/117+1001966..1003454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02760Os.9730.2.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02760Os.9730.1.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02770Os.17878.1.S1_at11/117+1010179..1013284F-box domain containing protein, expressed
LOC_Os07g02780Os.34851.1.S1_at11/117+1013653..1019896protein kinase family protein, putative, expressed
LOC_Os07g02790Os.5591.1.S1_at11/117+1022177..1024721expressed protein
LOC_Os07g02800Os.10333.1.S1_at11/117+1044316..1046349myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5591.1.S1_at--466--2791Chr07:1023820..1023844 (25 bp)
AAGAGGTTCTTCTCAGTGGAGGCGA
LOC_Os07g02790
Os.5591.1.S1_at--838--1531Chr07:1024252..1024272 (21 bp)
AGCATCGTCTGTGAAGAGGCTCATG
LOC_Os07g02790
Os.5591.1.S1_at--760--5271Chr07:1024281..1024305 (25 bp)
GAATGAACAGGCTAACCCACGCAAT
LOC_Os07g02790
Os.5591.1.S1_at--701--2611Chr07:1024294..1024318 (25 bp)
AACCCACGCAATACAGCCATAGTTT
LOC_Os07g02790
Os.5591.1.S1_at--379--1371Chr07:1024389..1024413 (25 bp)
AGACTGCACTGCTGATGATAACGGG
LOC_Os07g02790
Os.5591.1.S1_at--172--691Chr07:1024454..1024478 (25 bp)
ATGACCCTTATGCATGTCCTTGGTA
LOC_Os07g02790
Os.5591.1.S1_at--135--751Chr07:1024467..1024491 (25 bp)
ATGTCCTTGGTACCGTGCCCTAGTT
LOC_Os07g02790
Os.5591.1.S1_at--517--9171Chr07:1024482..1024506 (25 bp)
TGCCCTAGTTGCTCAGTATGCTGTG
LOC_Os07g02790
Os.5591.1.S1_at--581--7911Chr07:1024598..1024622 (25 bp)
GGTTGTAACTGAATCATGGCCTTAA
LOC_Os07g02790
Os.5591.1.S1_at--227--7431Chr07:1024623..1024647 (25 bp)
GTGTTTGTAATTTGCTACCTCTGGT
LOC_Os07g02790
Os.5591.1.S1_at--675--9971Chr07:1024638..1024662 (25 bp)
TACCTCTGGTTGTAGCTGAATCATG
LOC_Os07g02790
Target Sequence 
AAGAGGTTCTTCTCAGTGGAGGCGAAAGCTAAAGATGCTAAGCTTATGGAATCAGCATCGTCTGTGAAGAGGCTCATGGC
TTGGATGAATGAACAGGCTAACCCACGCAATACAGCCATAGTTTTAACAATCATCAATGTGGTATATCTTGGTATCTTTA
TTAGAGAGTGCCTAAGATCGGATGAACATGCAAAAGACTGCACTGCTGATGATAACGGGGNCCGTAATTCAAGCTNCAGG
ATAGTTAAATATGGATGTCATGACCCTTATGCATGTCCTTGGTACCGTGCCCTAGTTGCTCAGTATGCTGTGATGTTAGT
ACTAGTTNTTTTTACAATGTAGTTAGTGGCAATGTCATNTATCAGGATTTCNCTATCAGACTTTTTGTAGTAATNTGCTG
TNTGGTTGTAACTGAATCATGGCCTTAAGTGTTTGTAATTTGCTACCTCTGGTTGTAGCTGAATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis